Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0625 ATGGCAGACATCGAGTCTCAAACCAACAACACAGTCTTTATAGGTAAAGCAAATCGCCCACTCACATTAATGTTCGAGGACGTGAGTTACAAGATTAAACCCAAGAACTCAAAATCCGAAGAGATGAAAACGATTTTAAAAGGAATAAAAGGAGTGGTCCGTCCAGGTGAGATGTTAGCTATGATGGGCCCATCAGGCTCGGGCAAGACCACACTCTTGACAGCTTTAGGAGGCCGGCTAAGCAGCGGCGGTGTTGGTGGCGGTCGACTAACTGGAACCATTACCTACAACAACAAACCCTTCTCAAACAAAATGAAAAGAAACATAGGGTTTGTTGCACAAGATGACATTCTTCTTCCCCATTTGACAGTGTTGGAAACCCTTGTTTTCACTGCTCTACTAAGGCTTCCCAATGAGTTGACGGCGCAACAGAAAGCAGCTCAAGCTGAGGTGGTTATTTCGCAGCTAGGGCTTAGTAAGTGCAAGAACAGTGTGGTGGGGAGTCAGATGGTGAGAGGAGTTTCTGGCGGAGAGAGGAAAAGGGTTAGTATTGCTCAAGAAATGCTTATAAACCCTAGTTTATTGTTTCTTGATGAACCCACTTCCGGTCTTGACTCAACTACGGCTCAGAGGATTGTTTCAACTCTTTGGGAGGTTGCTAATAATGGTGGGAGGACTGTGGTGATGACTATTCATCAGCCTTCTAGTAGACTTTTTTATATGTTTCACAAGATTTTATTGCTTTCTGAAGGCAATACTATGTACTTTGGGAAGGGATCAGAAGCTATGGATTATTTCTCCACTCTTGGTTATGCTCCTTCTGTGCCTATGAACCCTTCTGATTTCTTGTTGGATCTTGCTAATGGTTTGTCAATGAATGATCCAGAAGAGGAGGTAGCCATGGTTAAGGAGAAACTTGTAACAGCTTACAAGAACAATAATATAGCTGAAAATTTGATGTTAGAGGTACAAGAAAGTGATGAGAATTTGGTTGAAGATGGATCAGAGGAAAAGAGTTATGGACGTTGGTCAACAACTTGGTGCCAACAATTCTCTGTGCTGTTGAGAAGAGGAATCAAGGAAAGAAAGCATGACTCTTTTTCTGGACTCAAGATTGGCCAAGTTTTAGCTGTTGCTATCATGAGTGGACTCTTATGGTGGCAATCTGATGATTCACATTTACAAGATAAGATTGGACTGTTCTACTTCTCCTCAAGCTTCTGGGGTTTCTACCCTCTATTACAAGCCATCAGCACCTTCCCAAAAGAAAGAATGATTCTTGAAAAGGAAAGATCCTCAGGAATGTACAGGCTCTCATCCTACTTCATCTCAAGAACCACAAGCGACCTCCCGATGGAACTTGTCCTTCCCACCGTCTTTATCATCATAATCTACGTGATGGCGGGGTTGAAACGCACGGCGACGAGCTTCTTTGCCACTCTATTTTGTCAACTCCTAAGTGTTTTGGTGGCCCAAGGGTTTGGCCTGGCCATTGGAGCCCTTGTTTTGGACCAAACTTCAGCCACTATACTTGGATCAGTCATCATGCTTTGTTTCCTATTGACATCAGGCTATATTGTTCAGCATGTGCCAAAGTTTATTTCTTGGACTAAGTACATTTCTGTTGGTACTTATAGTTACAAGCTTTTGTTGATATCTCAATTTAAAGCTACTGATACTTATACATGCAGCAATGATGGAGGAAGGGTATGTGAAGTTGGAGAGTTCCCTCCAATTAAACTAGTAGGTCTTGATGGGAAACTCACTGCTCTGTTGGTTTTGGTTGCTATGCTTATTGGATATCGTCTTGTTGCTTACATTGCTTTGATGAGGATTGGTGTCACCAAGAGGAGCTAG 1857 42.7 MADIESQTNNTVFIGKANRPLTLMFEDVSYKIKPKNSKSEEMKTILKGIKGVVRPGEMLAMMGPSGSGKTTLLTALGGRLSSGGVGGGRLTGTITYNNKPFSNKMKRNIGFVAQDDILLPHLTVLETLVFTALLRLPNELTAQQKAAQAEVVISQLGLSKCKNSVVGSQMVRGVSGGERKRVSIAQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWEVANNGGRTVVMTIHQPSSRLFYMFHKILLLSEGNTMYFGKGSEAMDYFSTLGYAPSVPMNPSDFLLDLANGLSMNDPEEEVAMVKEKLVTAYKNNNIAENLMLEVQESDENLVEDGSEEKSYGRWSTTWCQQFSVLLRRGIKERKHDSFSGLKIGQVLAVAIMSGLLWWQSDDSHLQDKIGLFYFSSSFWGFYPLLQAISTFPKERMILEKERSSGMYRLSSYFISRTTSDLPMELVLPTVFIIIIYVMAGLKRTATSFFATLFCQLLSVLVAQGFGLAIGALVLDQTSATILGSVIMLCFLLTSGYIVQHVPKFISWTKYISVGTYSYKLLLISQFKATDTYTCSNDGGRVCEVGEFPPIKLVGLDGKLTALLVLVAMLIGYRLVAYIALMRIGVTKRS 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8537331 8540597 - CcPI632755_10g006250.1 Cco10g0625 189583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0625 618 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 22 606 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cco10g0625 618 Pfam ABC-2 type transporter 349 555 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cco10g0625 618 Gene3D - 22 269 IPR027417 -
Cco10g0625 618 Pfam ABC-2 type transporter 232 302 IPR043926 GO:0140359(InterPro)
Cco10g0625 618 SMART AAA_5 55 252 IPR003593 GO:0016887(InterPro)
Cco10g0625 618 FunFam ABC transporter G family member 22 33 269 - -
Cco10g0625 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 269 IPR027417 -
Cco10g0625 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 23 275 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco10g0625 618 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco10g0625 618 CDD ABCG_EPDR 20 257 - -
Cco10g0625 618 Pfam ABC transporter 46 202 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0625 K05681 - - csv:101213406 1049.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0281 Cco-Chr3:3027351 Cco10g0625 Cco-Chr10:8537331 1.30E-36 dispersed
Cco05g2481 Cco-Chr5:33228156 Cco10g0625 Cco-Chr10:8537331 6.30E-78 dispersed
Cco06g0915 Cco-Chr6:11760784 Cco10g0625 Cco-Chr10:8537331 1.60E-170 dispersed
Cco07g1181 Cco-Chr7:25564510 Cco10g0625 Cco-Chr10:8537331 5.20E-174 dispersed
Cco08g0904 Cco-Chr8:20933447 Cco10g0625 Cco-Chr10:8537331 9.80E-53 dispersed
Cco09g1003 Cco-Chr9:9536020 Cco10g0625 Cco-Chr10:8537331 1.20E-148 dispersed
Cco10g0625 Cco-Chr10:8537331 Cco10g1786 Cco-Chr10:31466441 2.20E-155 dispersed
Cco10g0625 Cco-Chr10:8537331 Cco10g0627 Cco-Chr10:8557385 5.20E-112 proximal
Cco10g0625 Cco-Chr10:8537331 Cco10g0628 Cco-Chr10:8562648 6.20E-97 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51