Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0633 GATGTACCAAATGAGGTCTATCGGAGCTTGGATGCAGTTCAGGCAGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTACTGTATTAAATGTTAGTCACAACAAACTTTTTGAACTACCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCGTTAATGAGAATACCTGAGGAAATTGGATCCGCCACTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTTGGATCTGTCAGATCTGAAGGCATCAAACAACTCCATTTCCAGCTTGCCCGATGAACTTGCAAACTGCTCAAAATTGACAAAGCTTGATATGGAGGGGAACAAGCTAACGGTGATTTCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAACTTAATGCATCAAAGAATTTGCTTAATGGACTGCCTGAGAATATTGGTAGCCTATCACGCCTCATTCGTTTAAATATATTCCAAAACAAAATTTCATCAATTCCACCTTCAATAAAGGATTGCTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTGAGTACGCTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGTTGAAAGGGTATCCAGTTGAGGCATGCAGGTTGCATCTCTTGGTCCTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCTCAGAAATCGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACTCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAAGTTTCTCCGCAGTAGACTTCCTGAAAATGAAGAGCCTGAAGCTAGTAGCACTCAAAGAGGGGATGTAATATCTATGGCAGCTAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGCAAGGGCTGAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTACCAATTGAACTTTCCTCATGTACTTCACTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTTGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGGTTTCAAGCAGTCTCCATGCTACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCTGGCTTACCACTTCTGCAAGAGCTTTACCTAAGGAGAATGCGGTTACATGAAGTTCCATCATCTATATTGGGCTTAAGGCACCTGCGGATACTTGATTTGAGTCAAAATTCAATTCAATTAGTTCCAGAGGGATTGAAGAATCTTGCTGCCCTTACTGAGCTGGACCTATCAGACAATAACATTTCGATGCTCCCTCCACAGCTGAGCTTGCTTGAACCCAGCCTACAGGTACTGAGACTGAATGGAAATCCACTAAGAAGCATTAGGAGGGCAATCTTGGACAAAGGAACCAAAGCTGTTTTAACATATTTGAAGGATAAATTGACTGATTGA 1686 42.05 DVPNEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLTVLNVSHNKLFELPAAIGELPALKLLDVSFNSLMRIPEEIGSATSLVKFDCSSNHLKELPGGLGRCLDLSDLKASNNSISSLPDELANCSKLTKLDMEGNKLTVISKNLIASWTMLTELNASKNLLNGLPENIGSLSRLIRLNIFQNKISSIPPSIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQLKGYPVEACRLHLLVLDLSNNSLSGLPSEIGKMTTLRKLLLTGNPIRTLRSSLVSGPTPALLKFLRSRLPENEEPEASSTQRGDVISMAARMSITSKELSLEGQGLSAVPSEVWESSELMKLDLSKNSLQELPIELSSCTSLQTLILSRNKIKDWPGAILKLLPNLMCLKLDNNPLKQIPSDGFQAVSMLQVLDLSGNIASLPEHPTFSGLPLLQELYLRRMRLHEVPSSILGLRHLRILDLSQNSIQLVPEGLKNLAALTELDLSDNNISMLPPQLSLLEPSLQVLRLNGNPLRSIRRAILDKGTKAVLTYLKDKLTD 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8665472 8681782 - CcPI632755_10g006330.1 Cco10g0633 189591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0633 561 Gene3D Ribonuclease Inhibitor 8 154 IPR032675 -
Cco10g0633 561 ProSiteProfiles Leucine-rich repeat profile. 383 405 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 Gene3D Ribonuclease Inhibitor 328 444 IPR032675 -
Cco10g0633 561 Gene3D Ribonuclease Inhibitor 155 249 IPR032675 -
Cco10g0633 561 Gene3D Ribonuclease Inhibitor 445 558 IPR032675 -
Cco10g0633 561 SUPERFAMILY L domain-like 23 297 - -
Cco10g0633 561 Gene3D Ribonuclease Inhibitor 250 322 IPR032675 -
Cco10g0633 561 SMART LRR_bac_2 252 271 - -
Cco10g0633 561 SMART LRR_bac_2 164 180 - -
Cco10g0633 561 SMART LRR_bac_2 358 378 - -
Cco10g0633 561 SMART LRR_bac_2 137 156 - -
Cco10g0633 561 SMART LRR_bac_2 68 87 - -
Cco10g0633 561 SMART LRR_bac_2 114 133 - -
Cco10g0633 561 SMART LRR_bac_2 499 518 - -
Cco10g0633 561 SMART LRR_bac_2 45 64 - -
Cco10g0633 561 SMART LRR_typ_2 68 91 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 382 404 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 524 546 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 45 66 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 499 522 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 275 298 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 405 428 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 184 207 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 359 381 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 230 253 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 476 498 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 429 452 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 137 160 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 453 475 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 23 44 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 254 274 IPR003591 -
Cco10g0633 561 SMART LRR_typ_2 92 114 IPR003591 -
Cco10g0633 561 ProSiteProfiles Leucine-rich repeat profile. 501 522 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 Pfam Leucine rich repeat 232 288 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 Pfam Leucine rich repeat 24 81 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 Pfam Leucine rich repeat 339 394 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 Pfam Leucine rich repeat 477 536 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 Pfam Leucine rich repeat 406 463 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 ProSiteProfiles Leucine-rich repeat profile. 254 275 IPR001611 GO:0005515(InterPro)
Cco10g0633 561 SUPERFAMILY L domain-like 339 541 - -
Cco10g0633 561 PRINTS Leucine-rich repeat signature 476 489 - -
Cco10g0633 561 PRINTS Leucine-rich repeat signature 255 268 - -
Cco10g0633 561 PANTHER - 156 291 IPR050216 -
Cco10g0633 561 FunFam Leucine-rich repeat-containing protein 40 450 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0633 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33