Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0637 ATGGCGGCGGCTTCAGCGATTTTCAAAATCTTCAGGAGGTCATCTTCAGGCTGCACTAGAACAGCAAGAACAGAGACAGATACATTTTATTTTGTGGTGTTGAGATTATACAGCGCAAGACGAAGCTGCGATCGAAGAAACCTCTTTGCGAGGATTAGTCCTCTTGGTGACCCTGAGCTTAGTGTAGTGCCGGTTCTTAATCAATGGATTGAGGAAGGCAGGAATATCGAGGATTTTGAGCTCCGGAGAATCGTTCGCGACCTTCGTACTTCCCGGCGGTATGGGCAAGCCCTTGAGGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTCGCCGTGCAGCTTGATTTGATTGGCCGAGTTCGTGGGTTGGATTCTGCAGAGAAGTATTTTGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTCGTAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAAAACTGGCCAGGCTGATAAGGTTCCAAATGTACTGTCTGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAAGTCTGATGTAATCAGTATGGAAAAGGTCTTGAAAGAAATGGAGAGTCAAACTCACGTATCCATGGATTGGACTACTTATTCAATGGTTGCTAGTTTTTTCATCAAAGCCGGTATGCATGAGAAAGCAATTAGTTATCTTCGGAAATGTGAGGACAAGGTCGATCAAGACGCACTTGGCTTCAATCATCTCATTTCACACTACACCAGTTTGGGACACAAGGATGAAGTAATGAGATTGTGGGCTCTTCAGAAGAAGTGTAAGAAGCAAGTCAACAGGGATTATATAACCATGTTGAGTTCTTTTGTAAAGCTGGAGTTGCTCGAGGAAGCTGAGAATCTTCTCGTGGAATGGGAGTCATCTTGCGAATGTTATGATTTTCGAGTTCCCAACATCGTTCTTATCGGGTATTCGCAAAAGGGGTTAATTGAGAGAGCTGAAAAGATGCTTCGAAACATCATCAAAGATGGGAGGATCCCATCACCAAATAGTTGGGGCATTATTGCAGCTGGGTACTTGGAAAAGCAGAACCTGGAGAAAGCTTTTCAGAGCATGAAAGAAGCTCTTGCTGTGAAAGACCAAAATAAAGGGTGGAGGCCCAAACCTAGCGTTTTCTCAAGCATACTGCGATGGCTATCTGAAAATGGAAGATATGAAGAGCTGAAAGAGTTTTTGAGCTCATTGAAGACTGTACCTTCCATGGATGGAAAACTAAATAATGCCTTAGATGAGCTTCTGAAAACCTTGAAAAACGAGGATGGAATAACGACGATGGGCGAATTAGAGATGAGGATTAAGTAG 1488 42.94 MAAASAIFKIFRRSSSGCTRTARTETDTFYFVVLRLYSARRSCDRRNLFARISPLGDPELSVVPVLNQWIEEGRNIEDFELRRIVRDLRTSRRYGQALEVSEWMCSKGLFSLTTRDFAVQLDLIGRVRGLDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKSLAHMQKMKEMGFASSPLCYNDIMCLYLKTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGAKSDVISMEKVLKEMESQTHVSMDWTTYSMVASFFIKAGMHEKAISYLRKCEDKVDQDALGFNHLISHYTSLGHKDEVMRLWALQKKCKKQVNRDYITMLSSFVKLELLEEAENLLVEWESSCECYDFRVPNIVLIGYSQKGLIERAEKMLRNIIKDGRIPSPNSWGIIAAGYLEKQNLEKAFQSMKEALAVKDQNKGWRPKPSVFSSILRWLSENGRYEELKEFLSSLKTVPSMDGKLNNALDELLKTLKNEDGITTMGELEMRIK 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8779584 8782628 - CcPI632755_10g006370.1 Cco10g0637 189595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0637 495 Coils Coil 404 424 - -
Cco10g0637 495 Gene3D Tetratricopeptide repeat domain 72 228 IPR011990 GO:0005515(InterPro)
Cco10g0637 495 Gene3D Tetratricopeptide repeat domain 229 317 IPR011990 GO:0005515(InterPro)
Cco10g0637 495 SUPERFAMILY TPR-like 260 426 IPR011990 GO:0005515(InterPro)
Cco10g0637 495 Pfam PPR repeat 360 386 IPR002885 -
Cco10g0637 495 Pfam PPR repeat 255 279 IPR002885 -
Cco10g0637 495 Pfam PPR repeat 150 178 IPR002885 -
Cco10g0637 495 Pfam PPR repeat 324 349 IPR002885 -
Cco10g0637 495 Gene3D Tetratricopeptide repeat domain 321 488 IPR011990 GO:0005515(InterPro)
Cco10g0637 495 PANTHER OS12G0527900 PROTEIN 29 477 - GO:0005739(PANTHER)
Cco10g0637 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Cco10g0637 495 Pfam PPR repeat family 184 227 IPR002885 -
Cco10g0637 495 NCBIfam pentatricopeptide repeat 149 178 IPR002885 -
Cco10g0637 495 NCBIfam pentatricopeptide repeat 184 216 IPR002885 -
Cco10g0637 495 SUPERFAMILY TPR-like 135 319 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0637 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0292 Cco-Chr7:2946738 Cco10g0637 Cco-Chr10:8779584 1.50E-72 dispersed
Cco07g0293 Cco-Chr7:2951215 Cco10g0637 Cco-Chr10:8779584 8.90E-41 dispersed
Cco07g0294 Cco-Chr7:2952225 Cco10g0637 Cco-Chr10:8779584 1.00E-13 dispersed
Cco09g1774 Cco-Chr9:30324802 Cco10g0637 Cco-Chr10:8779584 7.10E-33 dispersed
Cco10g0637 Cco-Chr10:8779584 Cco10g1798 Cco-Chr10:31557850 3.10E-06 dispersed
Cco10g0637 Cco-Chr10:8779584 Cco03g0613 Cco-Chr3:6254740 1.20E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002224 2 4 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 62