Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0638 ATGTTCTTTAGAGGTGAGTTCTTCGTCCATGGGGATAATGCTTGGTTTGATGCTCATGCAACTTTCTATGGTGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTATGACAATACATTCCATGCGGGATTTGGAGTAAACACGGCGGCGGTGAGCGGCGTACTTTTCAGAGGCGGAGAGGCGTGCGGCGCTTGTTTTCTCGTAATTTGCAACTACAAAGTCGACCCTAAGTGGTGTCTCCGCCGCCGCGCTGTCACCGTCACCGCCACAAATTTTTGCCCGTCCAATAACAACGGCGGCTGGTGCGACCCCCCTCGGTCCCATTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGCATTGTCCCAGTCCTTTACAAGAGGGTGAGTTGTAGAAGAAAAGGAGGGGTTAGATTCACATTGAGAGGGCAATCAAACTTCAACATGGTGATGATATCGAACGTAGGAGGTAGTGGGGATGTGAAGGCTGCATGGGTAAGAGGGTCGAGGACGAGGACGTGGATGCCCATGCACCGAAACTGGGGGGCAAATTGGCAAGCCAACATCGACCTCCGAAACCAAAGAATGTCGTTTAAGCTCACTCTAGTTGATGGAACAACATTAGAGTTTTTCAATGTTGTTCCTTCCTCTTGGAGGTTTGGACAGACATTTTCGTCCATGAATCAATTCTCCTAG 720 49.58 MFFRGEFFVHGDNAWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGVNTAAVSGVLFRGGEACGACFLVICNYKVDPKWCLRRRAVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVRGSRTRTWMPMHRNWGANWQANIDLRNQRMSFKLTLVDGTTLEFFNVVPSSWRFGQTFSSMNQFS 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8819650 8822750 - CcPI632755_10g006380.1 Cco10g0638 189596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0638 239 PRINTS Expansin signature 45 59 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 101 118 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 74 85 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 191 212 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 220 236 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 87 97 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 143 155 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PRINTS Expansin signature 155 176 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 PANTHER EXPANSIN-A15 14 235 IPR002963 GO:0009664(InterPro)
Cco10g0638 239 Gene3D - 6 140 IPR036908 -
Cco10g0638 239 Pfam Expansin C-terminal domain 145 223 IPR007117 -
Cco10g0638 239 SUPERFAMILY PHL pollen allergen 141 234 IPR036749 -
Cco10g0638 239 SMART dpbb_1 50 134 IPR007112 -
Cco10g0638 239 SUPERFAMILY Barwin-like endoglucanases 13 162 IPR036908 -
Cco10g0638 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 33 144 IPR007112 -
Cco10g0638 239 Pfam Lytic transglycolase 50 134 IPR009009 -
Cco10g0638 239 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Cco10g0638 239 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Cco10g0638 239 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576(InterPro)
Cco10g0638 239 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576(InterPro)
Cco10g0638 239 PRINTS Expansin/Lol pI family signature 182 196 IPR007118 GO:0005576(InterPro)
Cco10g0638 239 PRINTS Expansin/Lol pI family signature 14 29 IPR007118 GO:0005576(InterPro)
Cco10g0638 239 CDD DPBB_EXPA_N 15 139 - -
Cco10g0638 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 154 234 IPR007117 -
Cco10g0638 239 Gene3D - 144 238 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0300 Cco-Chr7:3021118 Cco10g0638 Cco-Chr10:8819650 2.20E-27 dispersed
Cco10g0638 Cco-Chr10:8819650 Cco11g0985 Cco-Chr11:16321521 4.40E-67 dispersed
Cco10g0638 Cco-Chr10:8819650 Cco07g0535 Cco-Chr7:6861690 2.80E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0638 - - - 0.0