Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0652 ATGGCTCCGATTTCTCTGCAACTCACCCCCTTCATTTCCCCACTACTCCACCACCGCAATCTCTGCCTTCACAGACCCCCAATTCCTCGTCTCTCGCCGCCGAAGCTTCCCAGATCGCTCGCCGTCCGATCGGTTCAACGAAATAATGAACACCCATCTCCGCCGCCCCCGCTCCCGCCCCCGCCGCAAAAACCCACCGGTTTTGACGATTTTCTTTCGATGGCCGCGAGTCTCTACCCTCTCTATGTGACGGCCGGCGGCATTGTTGCTTGTCTGAAACCGTTGACCTTCTCGTGGTTTGTGCAGAGAGGGCCCGCTTCGTATAGCTTTTCTCTTGGTTTGATTATGTTGGCCATGGGGCTTACGCTACAGCTCAAGGATTTGTTCAATTTGTTCATGCAGAGACCTCTTTCTATATTGTTTGGATGTGTAGCTCAGTACACGATTATGCCGGCTTCTGCAGCCCTTATCGGAAAATTTTTCGGGCTCTCGCCGTCGCTTTTGGTCGGTTTGATCTTGCTTGGATGTTGCCCTGGAGGAACTGCCTCCAATGTGGTAACCTTAATTGCTCAAGGCGACGTTCCTTTGTCTATTGTAATGACAGTATGCACAACTCTAGGAGCCATAATTTTCACTCCCTTTCTGACAAAAATACTAGCAGGAGCTTACATTCCAGTCGACGTTGTGCAGCTTTCTCTCAGCACCCTTCAGGTGGTGGTAGCTCCTATTCTGTTAGGTTCTTGGTTGCAGAAGGCATTTCCTTCGCTGGTGAAATTGGTGTTACCATTTGCACCAGTTATTGCCGTATTAACTTCTTCGCTGCTTGCTTGCAGTGTCTTCTCGGAGAACGTCGTTCGTTTCAAATCGTCAATGGTTAGTGCCACATTAGCCTCTGATGCATCTCTATGGACAGTTCTTCAAAGTATATTATCGGGAGAGTTGGGAGTAGTAATACTTTCGGTGATTTGTTTACACTTTGCTGGTTTCTTCGTCGGCTATATAGCAGCTGCTATCGGTGGGTTTCGGGAACAAGAACGAAGAGCTATATCCATTGAGGTTGGGATGCAGAGTTCATCATTTGGAGTTGTTTTGGCAACCTCACATTTCAGTTCAGCAATGGTTGCATTGCCCCCAGCAATGTCAGCTGTTATAATGAACATAATGGGGAGCACTCTTGCGTTTTGTTGGAGATATGTTGAACCTTCTGATGAAGTGAAAACCAGTGTTGTTGCCAAGTGA 1239 48.1 MAPISLQLTPFISPLLHHRNLCLHRPPIPRLSPPKLPRSLAVRSVQRNNEHPSPPPPLPPPPQKPTGFDDFLSMAASLYPLYVTAGGIVACLKPLTFSWFVQRGPASYSFSLGLIMLAMGLTLQLKDLFNLFMQRPLSILFGCVAQYTIMPASAALIGKFFGLSPSLLVGLILLGCCPGGTASNVVTLIAQGDVPLSIVMTVCTTLGAIIFTPFLTKILAGAYIPVDVVQLSLSTLQVVVAPILLGSWLQKAFPSLVKLVLPFAPVIAVLTSSLLACSVFSENVVRFKSSMVSATLASDASLWTVLQSILSGELGVVILSVICLHFAGFFVGYIAAAIGGFREQERRAISIEVGMQSSSFGVVLATSHFSSAMVALPPAMSAVIMNIMGSTLAFCWRYVEPSDEVKTSVVAK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9002978 9005568 - CcPI632755_10g006520.1 Cco10g0652 189610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0652 412 PANTHER SODIUM-BILE ACID COTRANSPORTER 65 402 IPR004710 -
Cco10g0652 412 Pfam Sodium Bile acid symporter family 111 284 IPR002657 GO:0016020(InterPro)
Cco10g0652 412 MobiDBLite consensus disorder prediction 50 64 - -
Cco10g0652 412 Gene3D - 66 398 IPR038770 -
Cco10g0652 412 MobiDBLite consensus disorder prediction 44 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0652 K03453 - - csv:101206254 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0331 Cco-Chr10:3871861 Cco10g0652 Cco-Chr10:9002978 2.60E-36 dispersed
Cco10g0652 Cco-Chr10:9002978 Cco11g1771 Cco-Chr11:30415718 8.70E-55 dispersed
Cco10g0652 Cco-Chr10:9002978 Cco10g0653 Cco-Chr10:9026826 1.90E-142 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003304 1 3 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 1 2 2 1 1 2 1 50