Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g0709 | CAATTGAAGTTGGGTTGCGAAGCTGGGTTAAGAAGCTTGGTTGTTAATTCAGGGACTCTATTGGCTTGGTTTGCTAATTGGACGTATCCCAAGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTTATCATCTGTTGCAGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGATGAGGAGGAAGATGAATTCGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTCGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATACTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTACCAAAAGTTAATTGGGACAAGTTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCTCCCAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCTAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACTGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTTACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCAACAATGAAGGTGTGGACAGTTATTCAATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTCGGGGACAAATGAGCCTTGTCGTCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTCGATACTGATGACAATGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG | 3126 | 42.58 | QLKLGCEAGLRSLVVNSGTLLAWFANWTYPKVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLLSSVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQSCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDALKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCYSFSLPCSDLELRTINNEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERSGTNEPCRHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 10049465 | 10066782 | + | CcPI632755_10g007090.1 | Cco10g0709 | 189667 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-like domain profile. | 414 | 466 | IPR001005 | - | |
| Cco10g0709 | 1041 | CDD | SANT | 528 | 569 | IPR001005 | - | |
| Cco10g0709 | 1041 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 44 | 1000 | IPR051575 | GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER) | |
| Cco10g0709 | 1041 | Gene3D | - | 416 | 467 | - | - | |
| Cco10g0709 | 1041 | MobiDBLite | consensus disorder prediction | 907 | 971 | - | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 467 | 522 | IPR017930 | - | |
| Cco10g0709 | 1041 | CDD | SANT | 474 | 518 | IPR001005 | - | |
| Cco10g0709 | 1041 | MobiDBLite | consensus disorder prediction | 710 | 732 | - | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-like domain profile. | 520 | 571 | IPR001005 | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-like domain profile. | 467 | 518 | IPR001005 | - | |
| Cco10g0709 | 1041 | Pfam | Myb-like DNA-binding domain | 525 | 571 | IPR001005 | - | |
| Cco10g0709 | 1041 | Pfam | Myb-like DNA-binding domain | 472 | 516 | IPR001005 | - | |
| Cco10g0709 | 1041 | Pfam | Myb-like DNA-binding domain | 577 | 621 | IPR001005 | - | |
| Cco10g0709 | 1041 | Pfam | Myb-like DNA-binding domain | 419 | 464 | IPR001005 | - | |
| Cco10g0709 | 1041 | Gene3D | - | 522 | 576 | - | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | SANT domain profile. | 470 | 519 | IPR017884 | - | |
| Cco10g0709 | 1041 | MobiDBLite | consensus disorder prediction | 932 | 949 | - | - | |
| Cco10g0709 | 1041 | SUPERFAMILY | Homeodomain-like | 522 | 618 | IPR009057 | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 524 | 571 | IPR017930 | - | |
| Cco10g0709 | 1041 | SUPERFAMILY | Homeodomain-like | 451 | 520 | IPR009057 | - | |
| Cco10g0709 | 1041 | MobiDBLite | consensus disorder prediction | 995 | 1018 | - | - | |
| Cco10g0709 | 1041 | MobiDBLite | consensus disorder prediction | 686 | 709 | - | - | |
| Cco10g0709 | 1041 | CDD | SANT | 579 | 622 | IPR001005 | - | |
| Cco10g0709 | 1041 | MobiDBLite | consensus disorder prediction | 652 | 748 | - | - | |
| Cco10g0709 | 1041 | Gene3D | - | 471 | 521 | - | - | |
| Cco10g0709 | 1041 | SUPERFAMILY | Homeodomain-like | 411 | 467 | IPR009057 | - | |
| Cco10g0709 | 1041 | SMART | sant | 576 | 624 | IPR001005 | - | |
| Cco10g0709 | 1041 | SMART | sant | 524 | 573 | IPR001005 | - | |
| Cco10g0709 | 1041 | SMART | sant | 471 | 520 | IPR001005 | - | |
| Cco10g0709 | 1041 | SMART | sant | 318 | 415 | IPR001005 | - | |
| Cco10g0709 | 1041 | SMART | sant | 418 | 468 | IPR001005 | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 572 | 626 | IPR017930 | - | |
| Cco10g0709 | 1041 | ProSiteProfiles | Myb-like domain profile. | 572 | 622 | IPR001005 | - | |
| Cco10g0709 | 1041 | Gene3D | - | 579 | 625 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1090 | Cco-Chr6:16445464 | Cco10g0709 | Cco-Chr10:10049465 | 1.20E-10 | dispersed | |
| Cco10g0709 | Cco-Chr10:10049465 | Cco10g0490 | Cco-Chr10:5875995 | 8.20E-09 | dispersed | |
| Cco10g0709 | Cco-Chr10:10049465 | Cco06g1907 | Cco-Chr6:29324449 | 5.30E-16 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60080 | PF13921 | Myb_DNA-bind_6 | 2.60E-11 | CL0123 | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g0709 | K09422 | - | csv:101216287 | 1654.03 |