Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0709 CAATTGAAGTTGGGTTGCGAAGCTGGGTTAAGAAGCTTGGTTGTTAATTCAGGGACTCTATTGGCTTGGTTTGCTAATTGGACGTATCCCAAGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTTATCATCTGTTGCAGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGATGAGGAGGAAGATGAATTCGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTCGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATACTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTACCAAAAGTTAATTGGGACAAGTTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCTCCCAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCTAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACTGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTTACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCAACAATGAAGGTGTGGACAGTTATTCAATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTCGGGGACAAATGAGCCTTGTCGTCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTCGATACTGATGACAATGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3126 42.58 QLKLGCEAGLRSLVVNSGTLLAWFANWTYPKVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLLSSVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQSCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDALKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCYSFSLPCSDLELRTINNEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERSGTNEPCRHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10049465 10066782 + CcPI632755_10g007090.1 Cco10g0709 189667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 414 466 IPR001005 -
Cco10g0709 1041 CDD SANT 528 569 IPR001005 -
Cco10g0709 1041 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 44 1000 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cco10g0709 1041 Gene3D - 416 467 - -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 907 971 - -
Cco10g0709 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 467 522 IPR017930 -
Cco10g0709 1041 CDD SANT 474 518 IPR001005 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 710 732 - -
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 520 571 IPR001005 -
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 467 518 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 525 571 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 472 516 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 577 621 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 419 464 IPR001005 -
Cco10g0709 1041 Gene3D - 522 576 - -
Cco10g0709 1041 ProSiteProfiles SANT domain profile. 470 519 IPR017884 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 932 949 - -
Cco10g0709 1041 SUPERFAMILY Homeodomain-like 522 618 IPR009057 -
Cco10g0709 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 524 571 IPR017930 -
Cco10g0709 1041 SUPERFAMILY Homeodomain-like 451 520 IPR009057 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 995 1018 - -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 686 709 - -
Cco10g0709 1041 CDD SANT 579 622 IPR001005 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 652 748 - -
Cco10g0709 1041 Gene3D - 471 521 - -
Cco10g0709 1041 SUPERFAMILY Homeodomain-like 411 467 IPR009057 -
Cco10g0709 1041 SMART sant 576 624 IPR001005 -
Cco10g0709 1041 SMART sant 524 573 IPR001005 -
Cco10g0709 1041 SMART sant 471 520 IPR001005 -
Cco10g0709 1041 SMART sant 318 415 IPR001005 -
Cco10g0709 1041 SMART sant 418 468 IPR001005 -
Cco10g0709 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 572 626 IPR017930 -
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 572 622 IPR001005 -
Cco10g0709 1041 Gene3D - 579 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0709 K09422 - - csv:101216287 1654.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1090 Cco-Chr6:16445464 Cco10g0709 Cco-Chr10:10049465 1.20E-10 dispersed
Cco10g0709 Cco-Chr10:10049465 Cco10g0490 Cco-Chr10:5875995 8.20E-09 dispersed
Cco10g0709 Cco-Chr10:10049465 Cco06g1907 Cco-Chr6:29324449 5.30E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1090 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.4 2.7e-297 1018.1
Cco06g1093 . 252 467 MYB-Related Transcription Factor Family AT1G09770 53.7 7.0e-51 199.5
Cco10g0709 . 202 654 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cco10g0709 . 202 654 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cco06g1090 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.4 2.7e-297 1018.1
Cco06g1093 . 252 467 MYB-Related Transcription Factor Family AT1G09770 53.7 7.0e-51 199.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60080 PF13921 Myb_DNA-bind_6 2.60E-11 CL0123 Cco TF