Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0709 CAATTGAAGTTGGGTTGCGAAGCTGGGTTAAGAAGCTTGGTTGTTAATTCAGGGACTCTATTGGCTTGGTTTGCTAATTGGACGTATCCCAAGGTACGTTGTGCTCATTCATGTTCATCCATGTCTCACCGCAACCATGACGATGAAGGTGACGTTGAGCTTCCTGTCAGCAAGGAAGATGATGTGGTTGATGAGGACATGGAAGCCCTTCGGAGAGCCTATAAGCATGTTGGAGTTAATCCTGAGGATTACATTAATCCTAGGTTGTTATCATCTGTTGCAGGAGATGCTAATCCTAGTTCTGATTCTGATGATGTTGATGATTTTGAACTTCTTCGAAATATTCAGAACCGGTTCTCATGTGTGGCTGATGAGCAGCCGTTGAGTACTCTCCCACCAATGTCCCTAGATGAGGAGGAAGATGAATTCGAGATGCTTCGTTCAATTCAGCGGCGCTTTGCAGCGTACGAAAGTGATACTTTGAGCAATAAACCCAATCAGTCGTGTGACCATGTTGGGTCTTTGAAGATGGATTTTGATGACACAGCTGTTGAGAGTCAGACAGCCTCAAAAAGGCCATCCATGCTAGCCTTTGAAAAGGGAAGCTTGCCAAAAGCTGCATTGGCATTTATTGATGCCATCAAGAAAAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCATCTTGAAGCTAGAATTGAGGAGAACAAAAAGCTCAGAAAACGTTTCAAAATACTCAAAGATTTCCAGGGTTCATGTAAACGGAGAACAACCTGTGCACTGTCTCAAATGATAGATCCTCGAGTCCAGTTGATTTCAGCTGCAAAACCACAAGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGCATTATGGCCCAGCTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGATGAAGTTTCCTCGTGTAGATCGAAAAAAATGGTCCGTTGTAGAAAGGGAGAATCTAGGGAAGGGAATAAGACAGCAATTTCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAACATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTACCAAAAGTTAATTGGGACAAGTTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAACTGGCCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGACTTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCTCCCAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCTAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTATTGCAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACTGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTACTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTTACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCAACAATGAAGGTGTGGACAGTTATTCAATGGATGAATTTACAGATAAAAGCCATGGGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTCGGGGACAAATGAGCCTTGTCGTCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTCGATACTGATGACAATGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 3126 42.58 QLKLGCEAGLRSLVVNSGTLLAWFANWTYPKVRCAHSCSSMSHRNHDDEGDVELPVSKEDDVVDEDMEALRRAYKHVGVNPEDYINPRLLSSVAGDANPSSDSDDVDDFELLRNIQNRFSCVADEQPLSTLPPMSLDEEEDEFEMLRSIQRRFAAYESDTLSNKPNQSCDHVGSLKMDFDDTAVESQTASKRPSMLAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKILKDFQGSCKRRTTCALSQMIDPRVQLISAAKPQAKDSSKKDKRLSAMHYGPAENSHVACYRMALMKFPRVDRKKWSVVERENLGKGIRQQFQEMVLQISVDQISGLQGFSADSDDLDNILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDALKKRKSNCQRNQADVTAQAGIANNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASTTVDDLKELKRKSVADRDLDDCYSFSLPCSDLELRTINNEGVDSYSMDEFTDKSHGVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERSGTNEPCRHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 1041
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 10049465 10066782 + CcPI632755_10g007090.1 Cco10g0709 189667
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 414 466 IPR001005 -
Cco10g0709 1041 CDD SANT 528 569 IPR001005 -
Cco10g0709 1041 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 44 1000 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Cco10g0709 1041 Gene3D - 416 467 - -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 907 971 - -
Cco10g0709 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 467 522 IPR017930 -
Cco10g0709 1041 CDD SANT 474 518 IPR001005 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 710 732 - -
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 520 571 IPR001005 -
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 467 518 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 525 571 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 472 516 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 577 621 IPR001005 -
Cco10g0709 1041 Pfam Myb-like DNA-binding domain 419 464 IPR001005 -
Cco10g0709 1041 Gene3D - 522 576 - -
Cco10g0709 1041 ProSiteProfiles SANT domain profile. 470 519 IPR017884 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 932 949 - -
Cco10g0709 1041 SUPERFAMILY Homeodomain-like 522 618 IPR009057 -
Cco10g0709 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 524 571 IPR017930 -
Cco10g0709 1041 SUPERFAMILY Homeodomain-like 451 520 IPR009057 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 995 1018 - -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 686 709 - -
Cco10g0709 1041 CDD SANT 579 622 IPR001005 -
Cco10g0709 1041 MobiDBLite consensus disorder prediction 652 748 - -
Cco10g0709 1041 Gene3D - 471 521 - -
Cco10g0709 1041 SUPERFAMILY Homeodomain-like 411 467 IPR009057 -
Cco10g0709 1041 SMART sant 576 624 IPR001005 -
Cco10g0709 1041 SMART sant 524 573 IPR001005 -
Cco10g0709 1041 SMART sant 471 520 IPR001005 -
Cco10g0709 1041 SMART sant 318 415 IPR001005 -
Cco10g0709 1041 SMART sant 418 468 IPR001005 -
Cco10g0709 1041 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 572 626 IPR017930 -
Cco10g0709 1041 ProSiteProfiles Myb-like domain profile. 572 622 IPR001005 -
Cco10g0709 1041 Gene3D - 579 625 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1090 Cco-Chr6:16445464 Cco10g0709 Cco-Chr10:10049465 1.20E-10 dispersed
Cco10g0709 Cco-Chr10:10049465 Cco10g0490 Cco-Chr10:5875995 8.20E-09 dispersed
Cco10g0709 Cco-Chr10:10049465 Cco06g1907 Cco-Chr6:29324449 5.30E-16 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60080 PF13921 Myb_DNA-bind_6 2.60E-11 CL0123 Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0709 K09422 - csv:101216287 1654.03