Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0716 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGATGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGCTGTCTATGGCAGGGCCGGGAGGACCTGGAATGAAAGTGATTTGTTCTGCCTTTATGCTTGTTGGTTGAAGGCTGAGGACTTCTTAAGCAATTGGGAGAACTTGGTATCGCTTAGTGGAAATGAAAACGGAAAGGAGAACAAAAATCCATTGGAATGA 921 48.1 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAVYGRAGRTWNESDLFCLYACWLKAEDFLSNWENLVSLSGNENGKENKNPLE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10246505 10253821 - CcPI632755_10g007160.1 Cco10g0716 189674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0716 306 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cco10g0716 306 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco10g0716 306 CDD PHD_AL_plant 202 251 IPR044104 -
Cco10g0716 306 Pfam PHD-finger 202 248 IPR019787 -
Cco10g0716 306 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco10g0716 306 MobiDBLite consensus disorder prediction 141 162 - -
Cco10g0716 306 MobiDBLite consensus disorder prediction 183 200 - -
Cco10g0716 306 SUPERFAMILY FYVE/PHD zinc finger 190 254 IPR011011 -
Cco10g0716 306 MobiDBLite consensus disorder prediction 141 201 - -
Cco10g0716 306 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cco10g0716 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cco10g0716 306 MobiDBLite consensus disorder prediction 163 182 - -
Cco10g0716 306 FunFam PHD finger alfin-like protein 194 250 - -
Cco10g0716 306 SMART PHD_3 201 249 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1580 Cco-Chr3:30424522 Cco10g0716 Cco-Chr10:10246505 1.30E-41 dispersed
Cco09g0081 Cco-Chr9:735488 Cco10g0716 Cco-Chr10:10246505 2.60E-94 dispersed
Cco10g0716 Cco-Chr10:10246505 Cco10g2197 Cco-Chr10:35034041 9.00E-81 dispersed
Cco10g0716 Cco-Chr10:10246505 Cco11g0181 Cco-Chr11:1797278 4.30E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60081 PF12165 Alfin 3.80E-68 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0716 K26274 - csv:101212601 486.878