Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0716 | ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGATGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGCTGTCTATGGCAGGGCCGGGAGGACCTGGAATGAAAGTGATTTGTTCTGCCTTTATGCTTGTTGGTTGAAGGCTGAGGACTTCTTAAGCAATTGGGAGAACTTGGTATCGCTTAGTGGAAATGAAAACGGAAAGGAGAACAAAAATCCATTGGAATGA | 921 | 48.1 | MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAVYGRAGRTWNESDLFCLYACWLKAEDFLSNWENLVSLSGNENGKENKNPLE | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 10246505 | 10253821 | - | CcPI632755_10g007160.1 | Cco10g0716 | 189674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0716 | 306 | ProSitePatterns | Zinc finger PHD-type signature. | 202 | 248 | IPR019786 | - | |
Cco10g0716 | 306 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cco10g0716 | 306 | CDD | PHD_AL_plant | 202 | 251 | IPR044104 | - | |
Cco10g0716 | 306 | Pfam | PHD-finger | 202 | 248 | IPR019787 | - | |
Cco10g0716 | 306 | PANTHER | CPG BINDING PROTEIN | 9 | 254 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cco10g0716 | 306 | MobiDBLite | consensus disorder prediction | 141 | 162 | - | - | |
Cco10g0716 | 306 | MobiDBLite | consensus disorder prediction | 183 | 200 | - | - | |
Cco10g0716 | 306 | SUPERFAMILY | FYVE/PHD zinc finger | 190 | 254 | IPR011011 | - | |
Cco10g0716 | 306 | MobiDBLite | consensus disorder prediction | 141 | 201 | - | - | |
Cco10g0716 | 306 | ProSiteProfiles | Zinc finger PHD-type profile. | 199 | 251 | IPR019787 | - | |
Cco10g0716 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 250 | IPR013083 | - | |
Cco10g0716 | 306 | MobiDBLite | consensus disorder prediction | 163 | 182 | - | - | |
Cco10g0716 | 306 | FunFam | PHD finger alfin-like protein | 194 | 250 | - | - | |
Cco10g0716 | 306 | SMART | PHD_3 | 201 | 249 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1580 | Cco-Chr3:30424522 | Cco10g0716 | Cco-Chr10:10246505 | 1.30E-41 | dispersed | |
Cco09g0081 | Cco-Chr9:735488 | Cco10g0716 | Cco-Chr10:10246505 | 2.60E-94 | dispersed | |
Cco10g0716 | Cco-Chr10:10246505 | Cco10g2197 | Cco-Chr10:35034041 | 9.00E-81 | dispersed | |
Cco10g0716 | Cco-Chr10:10246505 | Cco11g0181 | Cco-Chr11:1797278 | 4.30E-99 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60081 | PF12165 | Alfin | 3.80E-68 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0716 | K26274 | - | csv:101212601 | 486.878 |