Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0716 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCGCTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGATGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGCTGTCTATGGCAGGGCCGGGAGGACCTGGAATGAAAGTGATTTGTTCTGCCTTTATGCTTGTTGGTTGAAGGCTGAGGACTTCTTAAGCAATTGGGAGAACTTGGTATCGCTTAGTGGAAATGAAAACGGAAAGGAGAACAAAAATCCATTGGAATGA 921 48.1 MEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAVYGRAGRTWNESDLFCLYACWLKAEDFLSNWENLVSLSGNENGKENKNPLE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10246505 10253821 - CcPI632755_10g007160.1 Cco10g0716 189674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0716 306 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Cco10g0716 306 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco10g0716 306 CDD PHD_AL_plant 202 251 IPR044104 -
Cco10g0716 306 Pfam PHD-finger 202 248 IPR019787 -
Cco10g0716 306 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco10g0716 306 MobiDBLite consensus disorder prediction 141 162 - -
Cco10g0716 306 MobiDBLite consensus disorder prediction 183 200 - -
Cco10g0716 306 SUPERFAMILY FYVE/PHD zinc finger 190 254 IPR011011 -
Cco10g0716 306 MobiDBLite consensus disorder prediction 141 201 - -
Cco10g0716 306 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Cco10g0716 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Cco10g0716 306 MobiDBLite consensus disorder prediction 163 182 - -
Cco10g0716 306 FunFam PHD finger alfin-like protein 194 250 - -
Cco10g0716 306 SMART PHD_3 201 249 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0716 K26274 - - csv:101212601 486.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1580 Cco-Chr3:30424522 Cco10g0716 Cco-Chr10:10246505 1.30E-41 dispersed
Cco09g0081 Cco-Chr9:735488 Cco10g0716 Cco-Chr10:10246505 2.60E-94 dispersed
Cco10g0716 Cco-Chr10:10246505 Cco10g2197 Cco-Chr10:35034041 9.00E-81 dispersed
Cco10g0716 Cco-Chr10:10246505 Cco11g0181 Cco-Chr11:1797278 4.30E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1243 Blo02g01188 Blo03g00275 Bda06g00180 Bda08g00428 . . . . . . . . . . . Cpe01g00797 Cpe14g00651 . . . . . . . . . . . . . . Cone3ag0883 . Cone13ag0701 . . . . . . . . . . . Bma05g00910 . Sed07g1864 Cmo04g00939 . . . . . . . Bhi11g00926 Tan01g1498 . . . . . Cla10g00714 Cam10g0706 Cec10g0733 Cco10g0716 Clacu10g0742 Cmu10g1556 Cre10g0950 . Csa03g00676 Chy06g01612 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0716 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Cco11g0181 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.9 2.6e-94 342.0
Cco09g0081 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.1 7.1e-92 334.0
Cco08g1144 . 9 225 Alfin-like Transcription Factor Family AT1G14510 69.6 2.3e-82 302.4
Cco10g2197 . 1 237 Alfin-like Transcription Factor Family AT1G14510 57.5 8.2e-80 293.9
Cco11g0181 . 1 250 Alfin-like Transcription Factor Family AT5G26210 77.2 8.2e-112 400.2
Cco09g0081 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 8.8e-98 353.6
Cco10g0716 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.7e-94 342.0
Cco08g1144 . 1 225 Alfin-like Transcription Factor Family AT5G26210 70.9 2.1e-91 332.4
Cco10g2197 . 1 239 Alfin-like Transcription Factor Family AT5G26210 57.1 7.0e-79 290.8
Cco11g0181 . 1 250 Alfin-like Transcription Factor Family AT3G42790 71.3 4.9e-101 364.4
Cco09g0081 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 6.2e-96 347.4
Cco10g0716 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Cco08g1144 . 1 225 Alfin-like Transcription Factor Family AT3G42790 66.5 4.6e-83 304.7
Cco10g2197 . 9 239 Alfin-like Transcription Factor Family AT3G42790 58.3 1.2e-78 290.0
Cco10g2197 . 6 240 Alfin-like Transcription Factor Family AT5G05610 75.1 3.0e-103 371.7
Cco11g0181 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Cco09g0081 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Cco10g0716 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.1e-84 308.5
Cco08g1144 . 8 225 Alfin-like Transcription Factor Family AT5G05610 65.6 6.0e-80 294.3
Cco10g2197 . 44 240 Alfin-like Transcription Factor Family AT3G11200 74.8 7.8e-85 310.5
Cco11g0181 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 3.6e-74 275.0
Cco09g0081 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.2 1.1e-73 273.5
Cco10g0716 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Cco08g1144 . 44 225 Alfin-like Transcription Factor Family AT3G11200 64.8 1.7e-63 239.6
Cco10g0716 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cco11g0181 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Cco08g1144 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.2 1.3e-64 243.4
Cco09g0081 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.2e-63 238.8
Cco10g2197 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.6e-54 208.4
Cco07g0433 . 8 120 Alfin-like Transcription Factor Family AT2G02470 70.4 1.6e-43 173.3
Cco08g1144 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.8 7.3e-73 270.4
Cco11g0181 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.9e-71 263.8
Cco09g0081 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.2e-68 255.0
Cco10g0716 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Cco10g2197 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
Cco07g0433 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60081 PF12165 Alfin 3.80E-68 No_clan Cco TF