Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0731 ATGGAACGTCCAAAAGAATTGAGAGAACAGAGACGTACCTTCACCATATGTTTTCTTACTCCACCACCTTCCTCATCGTCATCGTCATCATCGATTACCCAATTTCAGATCAATAGCAGTTGTCAGCTGTCATTGTGCTGCTTAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCACGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCCAGTCCATCGTCTCTTTTGTTTCAGAAGAACACTTGGAGCACTCATTTATTTAGCATGAAATACCGACCTAAGTACATTGTGCCTTCTAGATGCAATTTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCACTGGATCCCCCTGGGATGAAGGCTGCTGTAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCTGGCGGTTAATTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCGTTTTTGCGTTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAATTTTGTTAGGTCGTTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTTACCATGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATCTTGATATCGTGCTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGTGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCTGCCAAAGAGACAATGCGATCTGATAGAAAGACAGAAGTCAAAACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTCCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGATAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATACAACAAACTGATTATTACTTTGGGGAGCAGCGACCGTGACAACACTTTGTTTGGGAGAATACCACCAGGAATTTCTCATATAATGAACAAAATGCTCAGTTTGCAGTTCTGTTACAAGATCTTATGCAAATGA 2517 42.67 MERPKELREQRRTFTICFLTPPPSSSSSSSSITQFQINSSCQLSLCCLGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLFQKNTWSTHLFSMKYRPKYIVPSRCNLLRCQSSLMTNQPLDPPGMKAAVVALTRFCNVLGACPPLAVNLVPAVCIIMFAVWGLGPFLRYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGVTLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMRSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDSSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSITKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSEYNKLIITLGSSDRDNTLFGRIPPGISHIMNKMLSLQFCYKILCK 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10702350 10710863 - CcPI632755_10g007310.1 Cco10g0731 189689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0731 838 MobiDBLite consensus disorder prediction 667 686 - -
Cco10g0731 838 Gene3D - 257 361 - -
Cco10g0731 838 Pfam Mechanosensitive ion channel, beta-domain 347 417 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco10g0731 838 Gene3D - 363 418 IPR023408 -
Cco10g0731 838 MobiDBLite consensus disorder prediction 702 725 - -
Cco10g0731 838 MobiDBLite consensus disorder prediction 558 725 - -
Cco10g0731 838 SUPERFAMILY Sm-like ribonucleoproteins 347 417 IPR010920 -
Cco10g0731 838 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 66 774 IPR045042 -
Cco10g0731 838 MobiDBLite consensus disorder prediction 762 794 - -
Cco10g0731 838 MobiDBLite consensus disorder prediction 592 614 - -
Cco10g0731 838 MobiDBLite consensus disorder prediction 767 794 - -
Cco10g0731 838 MobiDBLite consensus disorder prediction 636 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1322 Cco-Chr8:25081921 Cco10g0731 Cco-Chr10:10702350 8.20E-188 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0731 K22047 - csv:101217250 1279.62