Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0737 ATGCTTCGCTCCACTGATTCTCCCTTTCTTCCTTATGATTCTTCCTCCACCCCCTCCCCTCACTATCTCCTCGACAATTTCTACTCTCATAATGGATGGAGTAACAATAATACATCTCACCCAAAATCATCTCAACTTTTCTTCATGGATGGAGATGAAAATAACGATGCTGTGAAAGAAGACCAAACAACGACACCCACCATTTTTAGTACCTTCCTTCATCCACAAACCCATCATCACCACCAACCCAAGCTTGAAGATTTCCTGGGCGATTCCTCTCCCATGGTGCGATATTCCGACAGCCAAACCGACACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCCCCCCCTTACTTCGCCGACCAACAAGATCTCAAAACCATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACCCATATCCCCTCTGCTCATTCTATTGAATCTTCTCTCACTAATAATGAGTTGCCCTCTTTCTCTAACTGCCCTACCGGTGCTCTCTCACTCGCTGTCGCTCACTCCTCCGACACCGCCACTGCTGGGCCTATTGTGGCTGTAGATTCTGAGTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACAGCAACCACCAATTTTCCTGTTTCAAATTATGCCAAGGAATTGGAAGAAATGAAACATGTCACCAAACAAGAGTTTATCGCTTCCTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCCTCTATTTATAGAGGTGTAACAAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGTCGTGTTGCTGGCAACAAGGACTTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCTGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCCGTGACAAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCAAAGAGTGCGCTGCCTATTGGGGGAGCAGCAAAGAGGCTGAAGCTTTGTCTGGAATCCGATCACAAGCCGATTCCAAATCACGATCAAGCAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTCGGCACCACTGTGCAAGCGGTGCCACCAATCCCTTGTGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATCGGTTCGTCGGAGTCGACCAGCCCAGGCATTGCAGGACTGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCGCCAATCGTATTAA 1491 47.22 MLRSTDSPFLPYDSSSTPSPHYLLDNFYSHNGWSNNNTSHPKSSQLFFMDGDENNDAVKEDQTTTPTIFSTFLHPQTHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPPYFADQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIESSLTNNELPSFSNCPTGALSLAVAHSSDTATAGPIVAVDSESSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDHKPIPNHDQATQCSSGSNNINFGTTVQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAGLGTVAPQAAEFFVWPRQSY 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10917055 10920802 - CcPI632755_10g007370.1 Cco10g0737 189695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0737 496 CDD AP2 219 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 ProSiteProfiles AP2/ERF domain profile. 220 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 PRINTS Ethylene responsive element binding protein signature 359 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 FunFam AP2-like ethylene-responsive transcription factor 318 379 - -
Cco10g0737 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 413 - -
Cco10g0737 496 CDD AP2 318 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 SUPERFAMILY DNA-binding domain 318 379 IPR016177 GO:0003677(InterPro)
Cco10g0737 496 SUPERFAMILY DNA-binding domain 219 285 IPR016177 GO:0003677(InterPro)
Cco10g0737 496 FunFam AP2-like ethylene-responsive transcription factor ANT 219 285 - -
Cco10g0737 496 ProSiteProfiles AP2/ERF domain profile. 319 377 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 Gene3D AP2/ERF domain 220 285 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 Gene3D AP2/ERF domain 319 379 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 SMART rav1_2 220 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 SMART rav1_2 319 383 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco10g0737 496 Pfam AP2 domain 320 369 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0356 Cco-Chr8:7145880 Cco10g0737 Cco-Chr10:10917055 1.30E-07 dispersed
Cco10g0737 Cco-Chr10:10917055 Cco11g0916 Cco-Chr11:13224340 1.10E-99 dispersed
Cco10g0737 Cco-Chr10:10917055 Cco08g1852 Cco-Chr8:29537290 8.00E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60083 PF00847 AP2 1.80E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0737 K09285 - csv:101217714 846.654