Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0760 ATGCCATTTCTGAACCTTCCTCCATCTTCTCCCTACCTTCTTTTCTTCATCATTTACTTCTTCTTCTTCTTCTTCTTTCAGTTCTCTGTTTTCGCTCTCTTCTCCAACCACGATTACGATATTCTGATACGAATTAAAAACACCCATCTCGATGATCCCAAAGGCTGTTTGAACAATTGGGTTCCCAACCAAGCTCACAACCCCTGTAATTGGACTGGAATCACCTGCGATTCCACTAATTCCTCTGTTCTTTCCATCGATCTCAGTGATTCCGGCGTCTCCGGCGGATTTCCCTTCGAGTTTTGCCGGATTTCGTCTCTGAAATCCCTTTCTATCTCCAACTGCAGCGTCAATGGAACTTTACTCTCTCCTTCCTTCTCTCTTTGTTCTCATTTGCAACTCCTTAATCTTTCCTCTAACTTACTCGTCGGGAACTTGCCGGAGTTTTCCGCTGGTTTCACACAACTGAAAATTCTCGATCTCTCCGCCAACAATTTCACCGGTGATATTCCTCAAAGCTTCGGACAGTTACCGGCGCTGAGAGTGCTCCGTTTGTCGCAGAATCTGCTCAACGGCTCATTACCTTCTTTTCTGGGAAATCTCGGTGAGCTAACTGAAATGGCCATCGCTTATAATAATTTCAAACCCAATCGGTTACCACCTGAAATCGGAAACCTGAAGAAACTTGTAAACCTGTTTTTACCGTTTTCGAATTTCGTTGGACCCATTCCTGATTCCATCGGCAACCTTACTTTGCTTACTAATCTCGATTTATCTAGCAATTCCATTTCGGGTCCGATCCCGGATTCAATCGGCGGACTAAGGAGCATAAAGAAGATTCAACTCTATAATAATCGAATCTCCGGTGAGTTGCCGGAGATCATCGGAAATTTGACTACTCTGTTTTCGCTGGACATCTCGCAGAATAGTCTCACCGGGAAATTGCCGGAGAAAATTGCTGCTCTCCCTCTTCAATATCTGCATCTCAGTGACAATTTCCTCGACGGCGAGGTCCCGGAGAGCTTAGCTTCTAACCCAAATCTTCTCAATTTGAAATTGTTTAACAATAGCTTTTACGGCGAACTTCCCCGGAATTTGGGTCTGAATACTTACTTGAATGAGATTGATGTCTCTACCAACAATTTTGTGGGTGAAATTCCGAAATTTCTCTGCCATGGAAACCAACTTCAGAAAATCGTTTTATTCAACAACCGTCTCTCTGGAAATTTCCCAGAATCGTACGGTAGTTGCGATTCTCTGTATTATGTCAGAATTGAGAACAATCAACTTTCCGGGAAGGTACCGGACTCGTTCTGGAATCTCTCTAAGCTTACTAATATTCTGCTGGCGGAAAATCGATTTCAGGGCTCCATTCCTCCGGCGATAAGTGGCGTTCGTTTTCTCGAAGATTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTACCGAGGGAGATTTGCAAATTGCGAGAGCTCGTCCGGTTAGACGTCAGCAGGAATAAATTCTCCGGCGGAGTTCCTTCCTGTATAACAGAGTTGCAGCATCTTCAAAAGCTCGACATGGAAGAAAACATGTTCACCGGAGAAATACCCAAATCGGTTTACACATGGAAAGAACTAACCGAGTTGAATCTGTCGCACAATCAATTCATCGGTGAGATTCCGCCTCAACTAGGCGATTTACCAGTTCTAAAGTACTTGGATCTTTCTGCAAATTCACTCTCCGGCGAAATCCCCGAGGAATTGACGAAGCTTAAACTGGGTCAGTTCAATTTCTCCAACAACAAATTAACCGGAAAAGTTCCTTCCGGCTTCGACAACGAACTATTTGTCAGTAGCTTAATGGGTAATCCGGGTCTGTGTAGCCCGGTTTTGAAGCCGCTGAACCGGTGCCCCAAACCCAAATCCATAAGTTTTTATGTTGTCATTGTTTTGTCGCTTATCGCTTTCGTTCTCATCGGCTCTCTGATCTGGGTAATCAAATTCAAGATGAATCTCTTCAAGAAATCGAAATCCCCATGGACGGTGACCAAGTTCCAACGTGTTGGGTTCGATGAAGAAGATGTAATTCCTCATCTAACCAAAGCAAATATTATAGGGTCAGGCGGGTCAGGTACTGTCTTCAAAGTTGATCTAAAAATAGGTCAGACCATCGCAGTGAAGAACCTATGGAGTGGTCACAATAAATTGGATACAGAATTGGTTTTCCAGTCTGAAGTTGAGACATTGGGTCGTATTCGGCATGCCAATATTGTGAAGTTGCTCTTAAGTTGCAGCAATGGTGAAGGAAGTAGGATTCTTGTGTACGAGTACATGGAAAATGGTAGTTTGGGAGATGTCCTACACGAACACAAATCCGAAGCTTTGTCTAATTGGTCAAAGCGATACAATATCGCCCTCGGAGCAGCCCAAGGATTAGCTTACTTGCACCATGACTGCGTCCCTCCGATAATCCATCGCGATGTGAAGAGCAACAACATTCTCTTGGATGGAGAATTTCAACCTCGGGTGGCTGACTTCGGTTTGGCAAAGTCAATGCAACGACAGGCAGAAGCAAATGATGGCAATGTCATGTCTCGCATTGCTGGCTCCTACGGTTACATTGCCCCTGAGTATGGATATACAATGAAGGTGACAGAGAAGAGCGATGTGTATAGCTTTGGAGTGGTGTTGATGGAGCTAGTGACAGGGAAGCGACCGAACGATGCGTGTTTTAGGGAGAATGAAGATATTGTGAAATGGGTGACAAAGGCTGCTTTGTCCGAGGGAAAAGAAGAGAAAGGGTTCAGTTTGGATGAGATTATTGATGAAAAGTTGGATCCAAGGACATGTGAAGTAGAAGAGATAGTCAAGATTTTGGATGTGGCAGTGCTTTGTACTTCTGCTTTGCCTCTCAACAGACCATCCATGAGGAGAGTGGTTGAGCTCATAAGGGACACCAAATTGCCTCATTCCAAGTCATGA 2964 44.37 MPFLNLPPSSPYLLFFIIYFFFFFFFQFSVFALFSNHDYDILIRIKNTHLDDPKGCLNNWVPNQAHNPCNWTGITCDSTNSSVLSIDLSDSGVSGGFPFEFCRISSLKSLSISNCSVNGTLLSPSFSLCSHLQLLNLSSNLLVGNLPEFSAGFTQLKILDLSANNFTGDIPQSFGQLPALRVLRLSQNLLNGSLPSFLGNLGELTEMAIAYNNFKPNRLPPEIGNLKKLVNLFLPFSNFVGPIPDSIGNLTLLTNLDLSSNSISGPIPDSIGGLRSIKKIQLYNNRISGELPEIIGNLTTLFSLDISQNSLTGKLPEKIAALPLQYLHLSDNFLDGEVPESLASNPNLLNLKLFNNSFYGELPRNLGLNTYLNEIDVSTNNFVGEIPKFLCHGNQLQKIVLFNNRLSGNFPESYGSCDSLYYVRIENNQLSGKVPDSFWNLSKLTNILLAENRFQGSIPPAISGVRFLEDLLISGNNFSGQLPREICKLRELVRLDVSRNKFSGGVPSCITELQHLQKLDMEENMFTGEIPKSVYTWKELTELNLSHNQFIGEIPPQLGDLPVLKYLDLSANSLSGEIPEELTKLKLGQFNFSNNKLTGKVPSGFDNELFVSSLMGNPGLCSPVLKPLNRCPKPKSISFYVVIVLSLIAFVLIGSLIWVIKFKMNLFKKSKSPWTVTKFQRVGFDEEDVIPHLTKANIIGSGGSGTVFKVDLKIGQTIAVKNLWSGHNKLDTELVFQSEVETLGRIRHANIVKLLLSCSNGEGSRILVYEYMENGSLGDVLHEHKSEALSNWSKRYNIALGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFQPRVADFGLAKSMQRQAEANDGNVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDACFRENEDIVKWVTKAALSEGKEEKGFSLDEIIDEKLDPRTCEVEEIVKILDVAVLCTSALPLNRPSMRRVVELIRDTKLPHSKS 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11967358 11970404 + CcPI632755_10g007600.1 Cco10g0760 189718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0760 987 SMART serkin_6 693 977 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0760 987 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 24 977 IPR050647 -
Cco10g0760 987 Gene3D Phosphorylase Kinase; domain 1 668 771 - -
Cco10g0760 987 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Cco10g0760 987 Gene3D Ribonuclease Inhibitor 35 216 IPR032675 -
Cco10g0760 987 SUPERFAMILY L domain-like 380 623 - -
Cco10g0760 987 ProSitePatterns Protein kinases ATP-binding region signature. 699 721 IPR017441 GO:0005524(InterPro)
Cco10g0760 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 468 489 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 419 441 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 540 561 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 277 298 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 324 344 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Pfam Leucine Rich Repeat 564 585 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Gene3D Ribonuclease Inhibitor 323 638 IPR032675 -
Cco10g0760 987 SUPERFAMILY Protein kinase-like (PK-like) 686 976 IPR011009 -
Cco10g0760 987 Gene3D Ribonuclease Inhibitor 217 322 IPR032675 -
Cco10g0760 987 FunFam Receptor-like protein kinase HSL1 323 629 - -
Cco10g0760 987 ProSiteProfiles Protein kinase domain profile. 693 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0760 987 FunFam Leucine-rich receptor-like protein kinase family protein 219 317 - -
Cco10g0760 987 ProSiteProfiles Leucine-rich repeat profile. 539 562 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 Gene3D Transferase(Phosphotransferase) domain 1 772 986 - -
Cco10g0760 987 FunFam Leucine-rich repeat receptor-like protein kinase 35 196 - -
Cco10g0760 987 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515(InterPro)
Cco10g0760 987 SUPERFAMILY RNI-like 81 392 - -
Cco10g0760 987 SMART LRR_typ_2 250 274 IPR003591 -
Cco10g0760 987 SMART LRR_typ_2 561 585 IPR003591 -
Cco10g0760 987 SMART LRR_typ_2 153 176 IPR003591 -
Cco10g0760 987 SMART LRR_typ_2 489 513 IPR003591 -
Cco10g0760 987 SMART LRR_typ_2 177 201 IPR003591 -
Cco10g0760 987 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 772 987 - -
Cco10g0760 987 Pfam Protein kinase domain 695 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1472 Cco-Chr1:26515184 Cco10g0760 Cco-Chr10:11967358 2.60E-06 dispersed
Cco04g2113 Cco-Chr4:35000119 Cco10g0760 Cco-Chr10:11967358 2.60E-89 dispersed
Cco08g1362 Cco-Chr8:25541053 Cco10g0760 Cco-Chr10:11967358 2.60E-84 dispersed
Cco09g1718 Cco-Chr9:28849737 Cco10g0760 Cco-Chr10:11967358 9.00E-55 dispersed
Cco10g0760 Cco-Chr10:11967358 Cco11g1542 Cco-Chr11:28315101 2.00E-73 dispersed
Cco10g0760 Cco-Chr10:11967358 Cco10g0762 Cco-Chr10:12065143 1.90E-76 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87144 PF00069 Pkinase 7.30E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0760 - - - 0.0