Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0762 ATGCAGCTTCTTCTCCTTCTCTTTCTCCTTCTTCACCTCCATCTTCATGTCTCCCTTTCTTCTCACTTGCCTGAATATCGCGCTCTTCTCTCTCTCAAGAGCTCGTTTTCCGATGACTCCCGATCGCCGCTCTCCACTTGGGACGCCGCCACTGCCCACTGTACTTGGACCGGAGTCACCTGCGATTTCCGTCGCCACGTCGTCGGCCTTGACCTTGCAGGATTGAATCTCTCTGGTACTCTCTCTCCTGACCTGGGTTCTCTCCGGTTTCTCTCTAATCTCTCTCTCCCGTCCAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCCATCTCTACGCTTAAATACCTTAACCTCTCTAACAATCTCATTAATGGTACATTGCCCTTGCAACTCTCCTTGCTCAACAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATACAGTTGCCAAATCTCCGCCATTTGCATCTCGGGGGGAACTTCTTCTCCGGTGTGATTCCGCCGGGGTATGGAATGTGGCAGTTCATGGAGTATTTGGCGGTGTCTGGAAATGAGCTTCAAGGTCCGATCCCGCCGGAGATTGGTAATCTGACGAAGCTTCGTGAACTTTACATTGGGTATTATAATACCTACGACGGCGCTTTGCCGCCGGAAATTGGAAACTTATCCGAACTGGTTCGATTGGATGCTGCTAACTGTGGGTTGACGGGTGAGATCCCTCGCGAACTTGGAAAACTTAAGAAATTGGATACTCTGTTTCTTCAGGTGAACGGCTTTTCTGGGCCTTTGATTCCAGAACTTGGGAGCTTAACGGGATTGAAATCCATGGATTTATCTAACAACATTCTTGTTGGTGAGATTCCGGAGTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCAGAGCTGGAAGTGTTGCAGTTGTGGGAAAATAACTTCACTGGTTCTATTCCTTATAGTTTGGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCAAACAAGTTGACTGGAACTTTGCCTCCCGATATGTGCAATGGAAATAAACTTCAAACTCTGATAACCCTCGGTAATTTCTTGTTTGGTCCAATCCCTGAATCTCTTGGTAGATGCGAGTCGTTGAGCCGTATTCGAATGGGGGAGAATTTTCTCAATGGTTCCATCCCGAACGGTCTCTTCAGTTTGCCTAATCTTTCTCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCAGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGGCTCTCGGGATCCCTTCCATCGATGGTTGGAAATTTCTCCGGCGTCCAGAAGCTTCTACTCGATGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGACGGTTACAGCAGCTGTCAAAGATTGATTTCAGCCACAACAAATTCTCCGGTCCAATCGCTCCGGAGATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGTAACGAACTCTCGGGTGAGATTCCGAATGAAATCACCACAATGAGGATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCTGTTGATTTTTCATATAACAATCTCTCTGGTTTAGTTCCGGGCACGGGCCAGTTTAGCTACTTCAACTACACTTCATTTCTAGGCAACCCAGATCTCTGCGGTCCATACTTAGGACCTTGCAAAAATGGGGTCGGCAATGGCACACAGCAGCCTCATTTAAAAGCCTCACTCTCTTCTTCTGTGAAACTTCTGCTTGTCATTGTCTTGCTCGTCTGCTCGATCGCATTTGCCATTGCAGCAATCATCAAAGCTCGGTCGCTAAAACGAGCAAGCGGGTCTCGAGCTTGGAAATTAACCGCATTCCAAAGAGTAGATTTCACAGCAGATGACATTTTGGACTGTTTGAAAGAGGACAACATTATTGGGAAAGGAGGTGCTGGGATCGTTTACAAAGGTTTTATGCCGAGTGGCGATCACATCGCTGTGAAAAGACTGCCGGCGATGGGGCGAGGGTCGTCCCATGACCATGGATTCAGTGCTGAGATACAGACTTTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGTTTCTGCTCAAACCATGAAACCAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTACACGGGAAGAAAGGTGGGCATTTGCAATGGGACACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGCTATTTACATCATGACTGTTCGCCATTGATTGTCCATCGAGATGTAAAATCAAACAATATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCAGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATATGCCTATACATTGAGAGTAGACGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTACTCTTAGAACTGGTGAGTGGGCGGAAGCCCGTCGGAGAATTTGGCGATGGGGTCGACATAGTTCAGTGGGTCAGAAAAATGACTAGTCCCAACAATGAAGGGGTAGCGAAAATCATTGATCCACGGCTCTCCTCAGTCCCGCTGAATGAAGTAACTCATGTATTCTATGTAGCAATGCTATGCGTGGAAGACCAAGCCGTGGAGAGGCCAACCATGAGAGAAGTAGTTCAAATCCTCACGGAACTCCCAAGGTCACCAACTTCAAAACAAATAAACTCAAAAGAAGCCGAAGTAACAACCCCTCCGCTGCTGCCATCGTCCCCGGTGGTGGCATTAGATTCACCGAACAAAGCACAGCCACCACCTGATCTTCTGAGCATTTGA 3027 46.45 MQLLLLLFLLLHLHLHVSLSSHLPEYRALLSLKSSFSDDSRSPLSTWDAATAHCTWTGVTCDFRRHVVGLDLAGLNLSGTLSPDLGSLRFLSNLSLPSNQISGPIPPEISAISTLKYLNLSNNLINGTLPLQLSLLNNLEVLDLYNNNMSGNLPLVVIQLPNLRHLHLGGNFFSGVIPPGYGMWQFMEYLAVSGNELQGPIPPEIGNLTKLRELYIGYYNTYDGALPPEIGNLSELVRLDAANCGLTGEIPRELGKLKKLDTLFLQVNGFSGPLIPELGSLTGLKSMDLSNNILVGEIPESFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCNGNKLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPNGLFSLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPSMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKNGVGNGTQQPHLKASLSSSVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRVDFTADDILDCLKEDNIIGKGGAGIVYKGFMPSGDHIAVKRLPAMGRGSSHDHGFSAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVAKIIDPRLSSVPLNEVTHVFYVAMLCVEDQAVERPTMREVVQILTELPRSPTSKQINSKEAEVTTPPLLPSSPVVALDSPNKAQPPPDLLSI 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12065143 12068336 + CcPI632755_10g007620.1 Cco10g0762 189720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0762 1008 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0762 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Cco10g0762 1008 Pfam Protein tyrosine and serine/threonine kinase 691 960 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0762 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0762 1008 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 962 IPR050647 -
Cco10g0762 1008 Gene3D Phosphorylase Kinase; domain 1 657 766 - -
Cco10g0762 1008 Gene3D Ribonuclease Inhibitor 220 341 IPR032675 -
Cco10g0762 1008 Gene3D Transferase(Phosphotransferase) domain 1 767 981 - -
Cco10g0762 1008 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Cco10g0762 1008 Gene3D Ribonuclease Inhibitor 132 219 IPR032675 -
Cco10g0762 1008 SMART LRR_typ_2 160 183 IPR003591 -
Cco10g0762 1008 SMART LRR_typ_2 281 305 IPR003591 -
Cco10g0762 1008 SMART LRR_typ_2 497 521 IPR003591 -
Cco10g0762 1008 SMART LRR_typ_2 354 377 IPR003591 -
Cco10g0762 1008 SMART LRR_typ_2 569 592 IPR003591 -
Cco10g0762 1008 SMART LRR_typ_2 329 353 IPR003591 -
Cco10g0762 1008 MobiDBLite consensus disorder prediction 967 981 - -
Cco10g0762 1008 Gene3D Ribonuclease Inhibitor 342 618 IPR032675 -
Cco10g0762 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Cco10g0762 1008 SUPERFAMILY L domain-like 298 615 - -
Cco10g0762 1008 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0762 1008 MobiDBLite consensus disorder prediction 967 1008 - -
Cco10g0762 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Cco10g0762 1008 Gene3D Ribonuclease Inhibitor 24 131 IPR032675 -
Cco10g0762 1008 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 162 180 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 138 155 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 355 376 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 524 544 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cco10g0762 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Cco10g0762 1008 SUPERFAMILY Protein kinase-like (PK-like) 684 960 IPR011009 -
Cco10g0762 1008 SUPERFAMILY RNI-like 69 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0651 Cco-Chr3:6626657 Cco10g0762 Cco-Chr10:12065143 7.70E-89 dispersed
Cco04g1559 Cco-Chr4:30948394 Cco10g0762 Cco-Chr10:12065143 8.40E-24 dispersed
Cco04g1560 Cco-Chr4:30965638 Cco10g0762 Cco-Chr10:12065143 1.30E-22 dispersed
Cco04g2396 Cco-Chr4:37296958 Cco10g0762 Cco-Chr10:12065143 5.20E-132 dispersed
Cco05g2059 Cco-Chr5:29632991 Cco10g0762 Cco-Chr10:12065143 8.30E-09 dispersed
Cco09g2357 Cco-Chr9:37725253 Cco10g0762 Cco-Chr10:12065143 6.40E-65 dispersed
Cco10g0660 Cco-Chr10:9095725 Cco10g0762 Cco-Chr10:12065143 2.10E-139 dispersed
Cco10g0762 Cco-Chr10:12065143 Cco11g1542 Cco-Chr11:28315101 1.10E-74 dispersed
Cco10g0760 Cco-Chr10:11967358 Cco10g0762 Cco-Chr10:12065143 1.90E-76 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87145 PF07714 PK_Tyr_Ser-Thr 1.70E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0762 - - - 0.0