Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0780 ATGAAGCCATGGGGTAATTTGGGCCTTTGGTTCACAGCCATGGCTGCCGTTTTCCTCTTCTTCTTCTGTCTCGACCACAATGGCTACCGGATTTCAACGTTCCCAGTAAGGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTATTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTCGTTGGATTGAGCTACAATGGAATCGACAACATTCTTGAAACCAAAAACGAAGAGCATAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGGTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCAAAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAATGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGGTTATTAGTCCGTGATGGGTACATCAGTAGCAAACTTATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTATAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGACCGCACTGCAGCAGAGTTTTATGTGCCCGACCCTTATCCGACTCTCATGAATAAACTGTACAACAACCATGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAACGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAAGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAAGCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTAATTGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCGATTGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCACCTCTAACATAA 2043 46.45 MKPWGNLGLWFTAMAAVFLFFFCLDHNGYRISTFPVRRYLRDMDINNSSTLFNVTLQRKGGYVIMDNGIVLVTLSTPDGDVVGLSYNGIDNILETKNEEHNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSKMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYTFPQSEDFPSSAQRGSVTGRLLVRDGYISSKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTKDWFYAHVNRNVGNQTYQATTWEIRFLLQSVNQTANYTLQIALASAAECELQVRLIDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARSESPFEGLMYDYIRLEAPPLT 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13584097 13596444 + CcPI632755_10g007800.1 Cco10g0780 189738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0780 680 Gene3D - 52 341 IPR014718 GO:0030246(InterPro)
Cco10g0780 680 SUPERFAMILY Galactose mutarotase-like 65 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cco10g0780 680 CDD RGL4_N 60 344 - -
Cco10g0780 680 CDD RGL4_M 377 473 IPR029413 -
Cco10g0780 680 Pfam Polysaccharide lyase family 4, domain II 400 472 IPR029413 -
Cco10g0780 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 678 IPR051850 -
Cco10g0780 680 Pfam Rhamnogalacturonate lyase family 53 246 IPR010325 -
Cco10g0780 680 SUPERFAMILY Galactose-binding domain-like 484 675 IPR008979 -
Cco10g0780 680 Gene3D - 484 675 - -
Cco10g0780 680 FunFam Rhamnogalacturonate lyase B 374 473 - -
Cco10g0780 680 Pfam Polysaccharide lyase family 4, domain III 486 674 IPR029411 -
Cco10g0780 680 CDD RGL4_C 488 675 - -
Cco10g0780 680 Gene3D - 374 476 - -
Cco10g0780 680 SUPERFAMILY Starch-binding domain-like 375 476 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0780 Cco-Chr10:13584097 Cco11g1524 Cco-Chr11:28093468 8.00E-231 dispersed
Cco10g0780 Cco-Chr10:13584097 Cco04g1583 Cco-Chr4:31210125 4.00E-238 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0780 K18195 - csv:101215252 1269.22