Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0785 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAGTGATCAAAGGTTGAAGAAGAAGCCTGCACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCAGTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATCGATGTCAACAACAAGATGATGATGATTAATAACAACTCTGATGTGGGTGTTCATCATTTGCATCGCCAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTGAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGGCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTCCGCCGCATGTTAG 831 45.49 MGLDDFCQTGLVLGLGLSSDQRLKKKPAPCSSSSLDFEPCALTLGFSGSGGGSETHQKVIDVNNKMMMINNNSDVGVHHLHRQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVELDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKALKLAQPLYMQMPAATLTICPSCERLGGGGASKPKFSMAPKPHFYNPFSNPSAAC 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14746659 14747720 - CcPI632755_10g007850.1 Cco10g0785 189743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0785 276 MobiDBLite consensus disorder prediction 80 134 - -
Cco10g0785 276 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0785 276 CDD homeodomain 134 191 IPR001356 GO:0003677(InterPro)
Cco10g0785 276 SMART HOX_1 132 194 IPR001356 GO:0003677(InterPro)
Cco10g0785 276 Gene3D - 138 188 - -
Cco10g0785 276 MobiDBLite consensus disorder prediction 101 134 - -
Cco10g0785 276 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 268 IPR050762 -
Cco10g0785 276 SMART halz 190 233 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g0785 276 FunFam Homeobox-leucine zipper protein 18 120 195 - -
Cco10g0785 276 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677(InterPro)
Cco10g0785 276 Pfam Homeodomain 134 188 IPR001356 GO:0003677(InterPro)
Cco10g0785 276 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco10g0785 276 SUPERFAMILY Homeodomain-like 122 191 IPR009057 -
Cco10g0785 276 Coils Coil 196 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1550 Cco-Chr4:30894023 Cco10g0785 Cco-Chr10:14746659 5.70E-76 dispersed
Cco05g2006 Cco-Chr5:29163965 Cco10g0785 Cco-Chr10:14746659 3.40E-52 dispersed
Cco06g1583 Cco-Chr6:26405633 Cco10g0785 Cco-Chr10:14746659 9.20E-40 dispersed
Cco07g0723 Cco-Chr7:13656262 Cco10g0785 Cco-Chr10:14746659 6.90E-34 dispersed
Cco10g0785 Cco-Chr10:14746659 Cco10g1745 Cco-Chr10:31007523 2.80E-49 dispersed
Cco10g0785 Cco-Chr10:14746659 Cco09g0363 Cco-Chr9:3298066 3.00E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60087 PF00046 Homeodomain 5.20E-16 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0785 K09338 - csv:101205848 374.015