Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0785 | ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAGTGATCAAAGGTTGAAGAAGAAGCCTGCACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCAGTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATCGATGTCAACAACAAGATGATGATGATTAATAACAACTCTGATGTGGGTGTTCATCATTTGCATCGCCAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTGAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGGCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTCCGCCGCATGTTAG | 831 | 45.49 | MGLDDFCQTGLVLGLGLSSDQRLKKKPAPCSSSSLDFEPCALTLGFSGSGGGSETHQKVIDVNNKMMMINNNSDVGVHHLHRQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVELDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKALKLAQPLYMQMPAATLTICPSCERLGGGGASKPKFSMAPKPHFYNPFSNPSAAC | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14746659 | 14747720 | - | CcPI632755_10g007850.1 | Cco10g0785 | 189743 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0785 | 276 | MobiDBLite | consensus disorder prediction | 80 | 134 | - | - | |
Cco10g0785 | 276 | Pfam | Homeobox associated leucine zipper | 190 | 224 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0785 | 276 | CDD | homeodomain | 134 | 191 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0785 | 276 | SMART | HOX_1 | 132 | 194 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0785 | 276 | Gene3D | - | 138 | 188 | - | - | |
Cco10g0785 | 276 | MobiDBLite | consensus disorder prediction | 101 | 134 | - | - | |
Cco10g0785 | 276 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 10 | 268 | IPR050762 | - | |
Cco10g0785 | 276 | SMART | halz | 190 | 233 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco10g0785 | 276 | FunFam | Homeobox-leucine zipper protein 18 | 120 | 195 | - | - | |
Cco10g0785 | 276 | ProSiteProfiles | 'Homeobox' domain profile. | 130 | 190 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0785 | 276 | Pfam | Homeodomain | 134 | 188 | IPR001356 | GO:0003677(InterPro) | |
Cco10g0785 | 276 | ProSitePatterns | 'Homeobox' domain signature. | 165 | 188 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco10g0785 | 276 | SUPERFAMILY | Homeodomain-like | 122 | 191 | IPR009057 | - | |
Cco10g0785 | 276 | Coils | Coil | 196 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1550 | Cco-Chr4:30894023 | Cco10g0785 | Cco-Chr10:14746659 | 5.70E-76 | dispersed | |
Cco05g2006 | Cco-Chr5:29163965 | Cco10g0785 | Cco-Chr10:14746659 | 3.40E-52 | dispersed | |
Cco06g1583 | Cco-Chr6:26405633 | Cco10g0785 | Cco-Chr10:14746659 | 9.20E-40 | dispersed | |
Cco07g0723 | Cco-Chr7:13656262 | Cco10g0785 | Cco-Chr10:14746659 | 6.90E-34 | dispersed | |
Cco10g0785 | Cco-Chr10:14746659 | Cco10g1745 | Cco-Chr10:31007523 | 2.80E-49 | dispersed | |
Cco10g0785 | Cco-Chr10:14746659 | Cco09g0363 | Cco-Chr9:3298066 | 3.00E-51 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60087 | PF00046 | Homeodomain | 5.20E-16 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0785 | K09338 | - | csv:101205848 | 374.015 |