Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0813 ATGGAGTTGGAGGATCACGTAAAAGAAGACATGAAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACAGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAACCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA 591 53.13 MELEDHVKEDMKIVEPPSNYINKIHPLSRHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNRESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKKDEAAVMEFCNEIGVNRRVLKVWMHNNKNTFRSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16698730 16699320 + CcPI632755_10g008130.1 Cco10g0813 189771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0813 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco10g0813 196 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cco10g0813 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cco10g0813 196 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cco10g0813 196 Gene3D - 121 191 - -
Cco10g0813 196 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cco10g0813 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cco10g0813 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2700 Cco-Chr5:34914552 Cco10g0813 Cco-Chr10:16698730 5.30E-32 dispersed
Cco08g1684 Cco-Chr8:28265445 Cco10g0813 Cco-Chr10:16698730 3.30E-38 dispersed
Cco09g2028 Cco-Chr9:34533493 Cco10g0813 Cco-Chr10:16698730 3.00E-36 dispersed
Cco10g0813 Cco-Chr10:16698730 Cco11g0011 Cco-Chr11:140881 1.90E-36 dispersed
Cco10g0813 Cco-Chr10:16698730 Cco04g1610 Cco-Chr4:31428886 1.30E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60089 PF04770 ZF-HD_dimer 4.50E-28 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0813 - - - 0.0