Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0813 ATGGAGTTGGAGGATCACGTAAAAGAAGACATGAAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACAGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAACCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA 591 53.13 MELEDHVKEDMKIVEPPSNYINKIHPLSRHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNRESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKKDEAAVMEFCNEIGVNRRVLKVWMHNNKNTFRSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16698730 16699320 + CcPI632755_10g008130.1 Cco10g0813 189771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0813 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 187 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cco10g0813 196 NCBIfam homeobox domain, ZF-HD class 129 186 IPR006455 -
Cco10g0813 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cco10g0813 196 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cco10g0813 196 Gene3D - 121 191 - -
Cco10g0813 196 FunFam Zinc-finger homeodomain protein 2 119 190 - -
Cco10g0813 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cco10g0813 196 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0813 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2700 Cco-Chr5:34914552 Cco10g0813 Cco-Chr10:16698730 5.30E-32 dispersed
Cco08g1684 Cco-Chr8:28265445 Cco10g0813 Cco-Chr10:16698730 3.30E-38 dispersed
Cco09g2028 Cco-Chr9:34533493 Cco10g0813 Cco-Chr10:16698730 3.00E-36 dispersed
Cco10g0813 Cco-Chr10:16698730 Cco11g0011 Cco-Chr11:140881 1.90E-36 dispersed
Cco10g0813 Cco-Chr10:16698730 Cco04g1610 Cco-Chr4:31428886 1.30E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco11g0011 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.2e-51 200.7
Cco08g1302 . 22 241 ZF-HD Transcription Factor Family AT4G24660 51.1 2.1e-50 196.1
Cco10g0813 . 46 187 ZF-HD Transcription Factor Family AT4G24660 52.1 2.4e-41 166.0
Cco09g2028 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.0 3.1e-50 196.1
Cco10g1496 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cco04g1718 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cco08g1302 . 52 245 ZF-HD Transcription Factor Family AT5G65410 55.8 6.6e-46 181.4
Cco09g2028 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cco10g1496 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.0e-51 199.1
Cco09g2028 . 6 254 ZF-HD Transcription Factor Family AT5G15210 51.8 8.0e-49 191.0
Cco11g0011 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 3.9e-55 212.2
Cco10g1496 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cco09g2028 . 16 256 ZF-HD Transcription Factor Family AT3G28920 58.8 3.2e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60089 PF04770 ZF-HD_dimer 4.50E-28 No_clan Cco TF