Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0813 | ATGGAGTTGGAGGATCACGTAAAAGAAGACATGAAAATAGTAGAACCACCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCATATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACAGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCGGCACGGAAGCGAGTGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGAAGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAACCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA | 591 | 53.13 | MELEDHVKEDMKIVEPPSNYINKIHPLSRHTKNPSPVHSNPIIYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNRESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKKDEAAVMEFCNEIGVNRRVLKVWMHNNKNTFRSKESKQN | 196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 16698730 | 16699320 | + | CcPI632755_10g008130.1 | Cco10g0813 | 189771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0813 | 196 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 30 | 187 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cco10g0813 | 196 | NCBIfam | homeobox domain, ZF-HD class | 129 | 186 | IPR006455 | - | |
Cco10g0813 | 196 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 46 | 95 | IPR006456 | - | |
Cco10g0813 | 196 | SUPERFAMILY | Homeodomain-like | 123 | 189 | IPR009057 | - | |
Cco10g0813 | 196 | Gene3D | - | 121 | 191 | - | - | |
Cco10g0813 | 196 | FunFam | Zinc-finger homeodomain protein 2 | 119 | 190 | - | - | |
Cco10g0813 | 196 | Pfam | ZF-HD protein dimerisation region | 45 | 96 | IPR006456 | - | |
Cco10g0813 | 196 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 45 | 95 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2700 | Cco-Chr5:34914552 | Cco10g0813 | Cco-Chr10:16698730 | 5.30E-32 | dispersed | |
Cco08g1684 | Cco-Chr8:28265445 | Cco10g0813 | Cco-Chr10:16698730 | 3.30E-38 | dispersed | |
Cco09g2028 | Cco-Chr9:34533493 | Cco10g0813 | Cco-Chr10:16698730 | 3.00E-36 | dispersed | |
Cco10g0813 | Cco-Chr10:16698730 | Cco11g0011 | Cco-Chr11:140881 | 1.90E-36 | dispersed | |
Cco10g0813 | Cco-Chr10:16698730 | Cco04g1610 | Cco-Chr4:31428886 | 1.30E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60089 | PF04770 | ZF-HD_dimer | 4.50E-28 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0813 | - | - | - | 0.0 |