Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0858 ATGGGTATTTGCCCATGTTCGAAAATATGTTTATCTGAGTTGTTTTTACTCCACAATCAAGTTAACTGCCATCTCTTTTCGAGAAGAGCGTGCTATTCTTCCTTGTCGGTGTTGTTGGTGGAAGACCACGTGTTTGATGAAAGTCCAGTAGCTCAAATTAAAGTTCTTCCTGAAATTAACGTCAGAAGAAACTGTTCAATTGTTAGGAGGAAGGGGAAGCTCTTTCCTTTAGTTGTTCGGGTTCTAAAATCTTTGAACTGGAGGGTTGCGAGGCAGATAAGATTCTCAACAGCCGTGAAACGTTATGGGCATTTGAACTCTCTATGTGCATTTAGAATTATGGTTCATGTATTTGCATTAGCGGAAATGCGGATGGAAGTCTACTCTCTTCTTAAAGATATTGTTTGCCACACTAGGAAGGCTGAGCAAGATTTATCTGGATTGTTCCCATTTCTTATGGACTCGAATTATGATGTGGAGAAGTCAAGTATCGTGCTTGACCTGCTTATAAAGGTTTTCTCTGGAAATTCAATGGTTGAGAATGCTGTGGAAGTGTTTATTCAAGCCAAGAAAATGGGAATCATGCCAGATATTTCGTCATGCAATTTTTTGCTCAAGTGCTTGGGTGAAGCAAACAGAGAGGATTTTGTTAGATGTTTGTTTGAGGATTTGAAGACTTCTGGCCCAAATCCTACTGTATATACCTACACAATTATGATGAACTTCTTTTGCCAAGGATTAAATGGGCGCGATGTCAACATTAAAGAAGCAACCTTTCTCCTAGAGGAATTAATGAGGAGTGGTGAGAAACCCACTGTTGTAACGTACAGCATTTACATCCGTGCACTTTGTAAAGTTGTTTCTGGTCAGTCTGCTTTGGACTTCATTCAAGATCTGAGACTCAATAACCAACCTCTTAATGCTTATTGTTACAATCCAATTCTTCATAAATTTTGTCAAGAGGGTAAGACGGAGGAAGCTATGAAGGTTTTGCAGGAAATGATGGGTTATGGAATACTACCAGATGCATATAGTTATAGTATTTTGGTTGATGGGTTCTGCAAGAGAGGGGAAAATGATAAAGGTCTCAATCTGATTGAGGAAATGGAACTTTGTCAACTAAAACCATCCCTAGTCACCTATTCATCTCTGATTTATGGTCTTTGTAAGAGAGGATTGATGGATCTCTCCCTAGATATTTTTTGTAAACTTCAGAAACTTGGTTACAAATATGACTTGGTTGTTTATGACATTTTGATCAGAGGATTTTTTTCTCACGATGATATGGAGTATGCTAAAAAACTTTTGGATGAGATGGTAAATGATTTATGTCCTGATGCTTTTAATTTTAATGCAATGATTCGTTGGCTTTGCAAGATGGGACACTTTGATAAAGCCATAGGACTTCTCAATCTCATGCTAAAATATTGTGGTTTGGCTGATACGATGACTTGCAATTTTATTGTAGATGGGTACTGCAGAGAAGGGAACTTGGAGGAGGCCCTGAAATTAATGATTTATATGAAAGATCATGGTATCATGCCTAACTCATACACATTCAATATAATCATGAAGAGATTGTGTGAGGAAGGAAGACTGGAAAAAGTGTGGGAGCTTTTCCCTGCAATGCTAAAGTTGAATATACTTCCAGGGTTGGTACATTATAGTACTCTTATTGATGGTTTTGCAAAGCATTCTAATATGAAAAAGGCATTAATGCTGTATGAAAGAATGGAAAGACTAGGAGTTCCACCAGACACTGTCGCTTCTACTATCATTATTAACATGTTATGCCAGAGGAATGAAACATATCGGGCATATAAATTATTTAAGGAATTGATTGTAAAAGGTAAGAATCCAGATAAGATTCTGTACACTTCTATGATAGCTGGATTTAGTAGAACGGGAGACATGAAGAAGGCATGTGCTTTGTTTAATAAAATGTCAAATGAAGGATGTTCACCTACTGTTGTTACTTACACTTGTTTAATTGATGGATTCTTCAAGTTAAGACGCTTGGATCTTGCAAGTTTTTTGGTTGATGATATGAAGAGAAATAATCTTACACCAGATGTGATAGTTTACACGGTTCTTATTGTTGGGTTGCTTAGACTTGGAAAGATTGAAAAAGCACGTGAACTGGTTGATGAAGTGAGAGCGGGTGATATAATTTCAGAAGATGCTACTTTTCAAATGCTGGCTTCTAGCATTGTTAATCAGAAGTTGGAGAGCTAA 2235 37.32 MGICPCSKICLSELFLLHNQVNCHLFSRRACYSSLSVLLVEDHVFDESPVAQIKVLPEINVRRNCSIVRRKGKLFPLVVRVLKSLNWRVARQIRFSTAVKRYGHLNSLCAFRIMVHVFALAEMRMEVYSLLKDIVCHTRKAEQDLSGLFPFLMDSNYDVEKSSIVLDLLIKVFSGNSMVENAVEVFIQAKKMGIMPDISSCNFLLKCLGEANREDFVRCLFEDLKTSGPNPTVYTYTIMMNFFCQGLNGRDVNIKEATFLLEELMRSGEKPTVVTYSIYIRALCKVVSGQSALDFIQDLRLNNQPLNAYCYNPILHKFCQEGKTEEAMKVLQEMMGYGILPDAYSYSILVDGFCKRGENDKGLNLIEEMELCQLKPSLVTYSSLIYGLCKRGLMDLSLDIFCKLQKLGYKYDLVVYDILIRGFFSHDDMEYAKKLLDEMVNDLCPDAFNFNAMIRWLCKMGHFDKAIGLLNLMLKYCGLADTMTCNFIVDGYCREGNLEEALKLMIYMKDHGIMPNSYTFNIIMKRLCEEGRLEKVWELFPAMLKLNILPGLVHYSTLIDGFAKHSNMKKALMLYERMERLGVPPDTVASTIIINMLCQRNETYRAYKLFKELIVKGKNPDKILYTSMIAGFSRTGDMKKACALFNKMSNEGCSPTVVTYTCLIDGFFKLRRLDLASFLVDDMKRNNLTPDVIVYTVLIVGLLRLGKIEKARELVDEVRAGDIISEDATFQMLASSIVNQKLES 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17973912 17976146 - CcPI632755_10g008580.1 Cco10g0858 189816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Cco10g0858 744 Pfam Pentatricopeptide repeat domain 679 720 IPR002885 -
Cco10g0858 744 Gene3D Tetratricopeptide repeat domain 225 371 IPR011990 GO:0005515(InterPro)
Cco10g0858 744 Gene3D Tetratricopeptide repeat domain 542 743 IPR011990 GO:0005515(InterPro)
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 725 IPR002885 -
Cco10g0858 744 Pfam PPR repeat 442 473 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 624 657 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 554 587 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 518 550 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 450 476 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 484 516 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 344 377 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 693 720 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 309 343 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 658 692 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 414 441 IPR002885 -
Cco10g0858 744 NCBIfam pentatricopeptide repeat 379 412 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Cco10g0858 744 PANTHER ATPASE EXPRESSION PROTEIN 3 270 613 - -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 476 IPR002885 -
Cco10g0858 744 Gene3D Tetratricopeptide repeat domain 372 441 IPR011990 GO:0005515(InterPro)
Cco10g0858 744 Gene3D Tetratricopeptide repeat domain 62 224 IPR011990 GO:0005515(InterPro)
Cco10g0858 744 Gene3D Tetratricopeptide repeat domain 442 541 IPR011990 GO:0005515(InterPro)
Cco10g0858 744 SUPERFAMILY HCP-like 427 653 - -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 442 IPR002885 -
Cco10g0858 744 Pfam PPR repeat family 550 599 IPR002885 -
Cco10g0858 744 Pfam PPR repeat family 481 528 IPR002885 -
Cco10g0858 744 Pfam PPR repeat family 196 245 IPR002885 -
Cco10g0858 744 Pfam PPR repeat family 376 423 IPR002885 -
Cco10g0858 744 Pfam PPR repeat family 307 355 IPR002885 -
Cco10g0858 744 Pfam PPR repeat family 620 669 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cco10g0858 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0858 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1067 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00855 Cam10g0875 Cec10g0905 Cco10g0858 Clacu10g0900 Cmu10g1692 Cre10g1063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003935 0 8 0 0 1 1 1 1 1 0 1 1 1 0 0 1 1 0 1 1 0 0 1 1 0 1 1 1 0 1 26