Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0876 ATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGATGAGGACGACCTCCCAAGTGGCCCTGGTGCTACCACAATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACCATACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCCCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAATGAGGTTGCAGATGAACTTGTCGCAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAACAGTACGACGAAAAAAATATCAGGCGAAGGGTGTATGATGCCTTGAATGTCCTCATGGCAATGGATATTATTTCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTTAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTTAGTTCTGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGTGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTGTTCCTACATTGTCTAACACGCCAGTTAGAACTCCAACCTCGCCGCCTCTTCCTGGGATAATAAAAGCTCGTGTCAAGCACGAACATTAA 1044 47.61 MGTRTQQPCREDDEDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDHTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPVPTLSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18404179 18408381 - CcPI632755_10g008760.1 Cco10g0876 189834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0876 347 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cco10g0876 347 MobiDBLite consensus disorder prediction 1 95 - -
Cco10g0876 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cco10g0876 347 FunFam Transcription factor-like protein DPB 87 180 - -
Cco10g0876 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco10g0876 347 SMART DP_2 182 345 IPR014889 -
Cco10g0876 347 FunFam Transcription factor-like protein DPB 181 306 - -
Cco10g0876 347 Gene3D - 88 180 IPR036388 -
Cco10g0876 347 PANTHER TRANSCRIPTION FACTOR DP 24 309 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cco10g0876 347 Coils Coil 191 225 - -
Cco10g0876 347 Gene3D Transcription factor DP 181 303 IPR038168 -
Cco10g0876 347 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cco10g0876 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco10g0876 347 MobiDBLite consensus disorder prediction 22 57 - -
Cco10g0876 347 CDD DP_DD 180 283 IPR014889 -
Cco10g0876 347 Pfam Transcription factor DP 183 288 IPR014889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0876 K04683 - - csv:101216863 667.537
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60091 PF08781 DP 4.00E-41 No_clan Cco TF