Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0876 ATGGGTACAAGAACACAGCAACCATGCCGAGAAGACGATGAGGACGACCTCCCAAGTGGCCCTGGTGCTACCACAATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACCATACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCAGGGTCCCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACCTATAATGAGGTTGCAGATGAACTTGTCGCAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAACAGTACGACGAAAAAAATATCAGGCGAAGGGTGTATGATGCCTTGAATGTCCTCATGGCAATGGATATTATTTCAAAGGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCGTGAATGATATTGAAGAACTTAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGCTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTTAGTTCTGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGTGATAATACGGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTGTTCCTACATTGTCTAACACGCCAGTTAGAACTCCAACCTCGCCGCCTCTTCCTGGGATAATAAAAGCTCGTGTCAAGCACGAACATTAA 1044 47.61 MGTRTQQPCREDDEDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDHTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMSGMYQPPQIPVPTLSNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18404179 18408381 - CcPI632755_10g008760.1 Cco10g0876 189834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0876 347 PIRSF Txn_factor_DP 4 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cco10g0876 347 MobiDBLite consensus disorder prediction 1 95 - -
Cco10g0876 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Cco10g0876 347 FunFam Transcription factor-like protein DPB 87 180 - -
Cco10g0876 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco10g0876 347 SMART DP_2 182 345 IPR014889 -
Cco10g0876 347 FunFam Transcription factor-like protein DPB 181 306 - -
Cco10g0876 347 Gene3D - 88 180 IPR036388 -
Cco10g0876 347 PANTHER TRANSCRIPTION FACTOR DP 24 309 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cco10g0876 347 Coils Coil 191 225 - -
Cco10g0876 347 Gene3D Transcription factor DP 181 303 IPR038168 -
Cco10g0876 347 SUPERFAMILY E2F-DP heterodimerization region 182 294 IPR037241 -
Cco10g0876 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco10g0876 347 MobiDBLite consensus disorder prediction 22 57 - -
Cco10g0876 347 CDD DP_DD 180 283 IPR014889 -
Cco10g0876 347 Pfam Transcription factor DP 183 288 IPR014889 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60091 PF08781 DP 4.00E-41 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0876 K04683 - csv:101216863 667.537