Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0882 ATGTCATCGGAGAATTCATCCGAAGAACCGGCCATAGACAGCCCTAGTCGCCGATCAATCAGTGCAGTAGAGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAGTTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAATGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACACCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCGTGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGTACCAGTGGTATGGGTGCTGCCAATGATAATTTGAGTCGTCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTAGTTCCTCAGGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATATTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATACAGATGGATCGGGCAGTAGTCTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTTCAGAATCAGCTGCAACTCCTCCGTAAACCAAAAATGGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGTGTAACATCCTCTGCACTGTCATCGTCTTCATCAGATTCTCATCGACCTGGAGAAACCGAAAGACCGCAATCCTCTCTTGAATTCCATCGTCTTGGCTGGCTTTTGACGACCACTCTCGCTAGGTCGCCAACAGTGTCTAAAGTTGGATTTGAAGATCCTATGGGCAAACTGGTCACATGGAATGAAGACGATGAAACTCCCTACAACTTGTTTGGTATCAAACGCAATCCTAAATCTGATGGTCACATCGTCATTAGGTTGCAATTCCTTCAAATACTCACTTGCCAACAACTTCACTGGTACAATCAACTCCGTTCTTTCTCACATTGGAGGAAGTCCATTGCTATGGACATCCATAAGTTTTTAATGACCCTTGCTGCCTGGTCATCAGCTTCCATCGCATGCACGCTTCCTATAGGCAGCCAGAAGCCTGTTTCAACCGAGCTTGCCGCGCTTCTGCCGTCGTTTCCATCCGTTCGCATCGCTCAGTAG 2157 43.53 MSSENSSEEPAIDSPSRRSISAVERMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHRGVQSDANQQGTGTTSSSAQGTSGMGAANDNLSRHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVVPQVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGSGSSLNVSGSQLEAQERFLQQQIEILQNQLQLLRKPKMEENSRANEADKKGKSVTSSALSSSSSDSHRPGETERPQSSLEFHRLGWLLTTTLARSPTVSKVGFEDPMGKLVTWNEDDETPYNLFGIKRNPKSDGHIVIRLQFLQILTCQQLHWYNQLRSFSHWRKSIAMDIHKFLMTLAAWSSASIACTLPIGSQKPVSTELAALLPSFPSVRIAQ 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18481512 18495098 + CcPI632755_10g008820.1 Cco10g0882 189840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0882 718 MobiDBLite consensus disorder prediction 541 579 - -
Cco10g0882 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 360 IPR013083 -
Cco10g0882 718 SMART ring_2 317 354 IPR001841 -
Cco10g0882 718 MobiDBLite consensus disorder prediction 371 399 - -
Cco10g0882 718 PANTHER RING ZINC FINGER PROTEIN 19 362 IPR050731 -
Cco10g0882 718 MobiDBLite consensus disorder prediction 365 399 - -
Cco10g0882 718 MobiDBLite consensus disorder prediction 553 568 - -
Cco10g0882 718 Coils Coil 511 531 - -
Cco10g0882 718 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 289 364 - -
Cco10g0882 718 ProSiteProfiles Zinc finger RING-type profile. 317 355 IPR001841 -
Cco10g0882 718 SUPERFAMILY RING/U-box 297 362 - -
Cco10g0882 718 Pfam Ring finger domain 316 355 IPR001841 -
Cco10g0882 718 CDD RING-H2_synoviolin 314 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1431 Cco-Chr4:29739257 Cco10g0882 Cco-Chr10:18481512 7.00E-08 dispersed
Cco09g1416 Cco-Chr9:18321794 Cco10g0882 Cco-Chr10:18481512 5.50E-19 dispersed
Cco10g0882 Cco-Chr10:18481512 Cco10g2265 Cco-Chr10:35515033 7.10E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0882 K10601 - csv:101215351 965.296