Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0883 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCATTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGAGAAATTCCCTCAGAGCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATCTTCTTAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGCCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCTGTTGCGGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGCGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCTGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCAACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGTACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACAACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCTGATCTCTATGCCAAAAAAGAAGAAGAAAAAAGGGAAAAATTGCCGCCGGTTCTCTTCCTCACCTATCGGACGTCGCCGCCGGCTGAAGCTCCGATCACCTGCGCCGGTGGTGGTGGTGGTGGGTTCTTCATTCGCACGGTCCCATATTTGTTTGACAGTGCAATTTCGCTTCCGAATTCAAGCATTCAACGGCCAAATTTACCCACCCCCGTACTTGAGTTGACTTGCTGGAATTCAAATACCCATTTGTTGTTTTTGAGGCCCTTTTTATAA 2103 45.17 MSVMLGSCSSSLWIIFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSELGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSDLYAKKEEEKREKLPPVLFLTYRTSPPAEAPITCAGGGGGGFFIRTVPYLFDSAISLPNSSIQRPNLPTPVLELTCWNSNTHLLFLRPFL 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18529458 18542958 + CcPI632755_10g008830.1 Cco10g0883 189841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0883 700 Pfam Leucine Rich Repeat 94 114 IPR001611 GO:0005515(InterPro)
Cco10g0883 700 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cco10g0883 700 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cco10g0883 700 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cco10g0883 700 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cco10g0883 700 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Cco10g0883 700 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cco10g0883 700 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cco10g0883 700 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0883 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0883 700 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 589 - -
Cco10g0883 700 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Cco10g0883 700 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515(InterPro)
Cco10g0883 700 SMART serkin_6 290 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g0883 700 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cco10g0883 700 SUPERFAMILY L domain-like 28 203 - -
Cco10g0883 700 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Cco10g0883 700 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g0883 700 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Cco10g0883 700 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0178 Cco-Chr6:1848258 Cco10g0883 Cco-Chr10:18529458 3.00E-30 dispersed
Cco07g1802 Cco-Chr7:32152248 Cco10g0883 Cco-Chr10:18529458 8.20E-126 dispersed
Cco08g0388 Cco-Chr8:8528772 Cco10g0883 Cco-Chr10:18529458 2.70E-225 dispersed
Cco08g1959 Cco-Chr8:30404864 Cco10g0883 Cco-Chr10:18529458 4.30E-137 dispersed
Cco09g1677 Cco-Chr9:27767792 Cco10g0883 Cco-Chr10:18529458 2.50E-200 dispersed
Cco10g0883 Cco-Chr10:18529458 Cco11g0264 Cco-Chr11:2575393 8.30E-74 dispersed
Cco10g0883 Cco-Chr10:18529458 Cco11g0522 Cco-Chr11:5505113 1.80E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87148 PF00069 Pkinase 3.10E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0883 K13416 - csv:101216389 1122.46