Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0895 | ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATTTATGCCCTGCCAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGACTATCATGTTGCTAAATTTATTACTGTGCATGGCCGGGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGATAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACCGCTGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTCCTTTCGAAAAAAGGGCAGGAGGTGCAAATGTCTATTGATCATGAGCCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAACAAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTAATGTCAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA | 852 | 44.6 | MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVMSNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18857304 | 18861182 | + | CcPI632755_10g008950.1 | Cco10g0895 | 189853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0895 | 283 | PANTHER | PROTEIN PHOSPHATASE | 34 | 279 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cco10g0895 | 283 | SMART | PP2C_SIG_2 | 45 | 281 | IPR001932 | - | |
Cco10g0895 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - | |
Cco10g0895 | 283 | FunFam | Probable protein phosphatase 2C 39 | 26 | 282 | - | - | |
Cco10g0895 | 283 | SUPERFAMILY | PP2C-like | 30 | 282 | IPR036457 | - | |
Cco10g0895 | 283 | CDD | PP2Cc | 34 | 281 | IPR001932 | - | |
Cco10g0895 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - | |
Cco10g0895 | 283 | Gene3D | - | 30 | 283 | IPR036457 | - | |
Cco10g0895 | 283 | Pfam | Protein phosphatase 2C | 43 | 274 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0742 | Cco-Chr6:8462893 | Cco10g0895 | Cco-Chr10:18857304 | 1.70E-19 | dispersed | |
Cco10g0895 | Cco-Chr10:18857304 | Cco11g1844 | Cco-Chr11:31126697 | 4.20E-85 | dispersed | |
Cco10g0895 | Cco-Chr10:18857304 | Cco11g1461 | Cco-Chr11:27421448 | 6.90E-120 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0895 | K17506 | - | csv:101214223 | 547.354 |