Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0895 ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGACGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATTTATGCCCTGCCAGGTATGGCTTTAGCCTAGTAAAAGGCAAAGCAAATCATCCCATGGAGGACTATCATGTTGCTAAATTTATTACTGTGCATGGCCGGGAGCTAGGCCTTTTTGCTATATATGATGGACATTTAGGAGATAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCGGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGAAGAGGTGGATCCACCGCTGTCACTGCAATTTTGATAAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTCCTTTCGAAAAAAGGGCAGGAGGTGCAAATGTCTATTGATCATGAGCCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCAGTTTCTCGAGCATTTGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAACAAATGCCGATGTTGACTCTGACACTGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTAATGTCAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA 852 44.6 MDNLCCFNSVYSQFVGGRSSCSSGKGRGNLCPARYGFSLVKGKANHPMEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPGSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDITNADVDSDTELLILASDGLWKVMSNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18857304 18861182 + CcPI632755_10g008950.1 Cco10g0895 189853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0895 283 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco10g0895 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Cco10g0895 283 SMART PP2C_4 30 279 IPR001932 -
Cco10g0895 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Cco10g0895 283 SUPERFAMILY PP2C-like 30 282 IPR036457 -
Cco10g0895 283 CDD PP2Cc 34 281 IPR001932 -
Cco10g0895 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Cco10g0895 283 Gene3D - 30 283 IPR036457 -
Cco10g0895 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0742 Cco-Chr6:8462893 Cco10g0895 Cco-Chr10:18857304 1.70E-19 dispersed
Cco10g0895 Cco-Chr10:18857304 Cco11g1844 Cco-Chr11:31126697 4.20E-85 dispersed
Cco10g0895 Cco-Chr10:18857304 Cco11g1461 Cco-Chr11:27421448 6.90E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0895 K17506 - csv:101214223 547.354