Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0911 ATGGAGCACGATGACATCGACATGATTGGCTCCGACACCAACGACGCTGTGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAAGTCGAGAAAGAAATGAGTTCTGTCCAAGATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGGGAGGAAGTGGATTCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAATCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCGTATGTTGAATTCGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAATTGCATGGTCGACAGCTTAAGGTAACTGCCAAGAGGACAAACATACCCGGGATGAAGCAATATCGTCCACGCCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA 594 47.31 MEHDDIDMIGSDTNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQDPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19293157 19297864 - CcPI632755_10g009110.1 Cco10g0911 189869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0911 197 Coils Coil 19 46 - -
Cco10g0911 197 Pfam RNA recognition motif 71 139 IPR000504 GO:0003723(InterPro)
Cco10g0911 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 145 IPR000504 GO:0003723(InterPro)
Cco10g0911 197 MobiDBLite consensus disorder prediction 42 66 - -
Cco10g0911 197 CDD RRM_II_PABPs 70 141 - -
Cco10g0911 197 SUPERFAMILY RNA-binding domain, RBD 59 167 IPR035979 GO:0003676(InterPro)
Cco10g0911 197 SMART rrm1_1 70 141 IPR000504 GO:0003723(InterPro)
Cco10g0911 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 18 156 - GO:0008143(PANTHER)
Cco10g0911 197 Gene3D - 11 142 IPR012677 -
Cco10g0911 197 MobiDBLite consensus disorder prediction 52 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0911 K14396 - - csv:101213499 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1792 Cco-Chr7:32059137 Cco10g0911 Cco-Chr10:19293157 1.50E-69 dispersed
Cco07g1808 Cco-Chr7:32202140 Cco10g0911 Cco-Chr10:19293157 3.40E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1018 . . . . . . . Bma12g00369 . . . . . . . . . . . . . . . . Cla10g00890 Cam10g0915 . Cco10g0911 Clacu10g0942 Cmu10g1729 Cre10g1101 . . . . . . . . . . . . . . . . . . Cmo16g00250 . . . . Cpe14g00191 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000374 6 8 4 4 4 3 7 3 3 4 3 3 6 4 4 6 3 6 5 3 4 3 4 3 4 2 4 8 5 1 127