Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0917 ATGAGAGCCGAGGTGTGGCAGTTGGCAAAGATGAACGACGATGAACAACGGCGCCCAGCAAGACGATGGAAAGACCTCCAAGCTTTTGCAGCCATCGACAACCATGTGAAACCCTATACCACAACGGTTCTTGGTCCTGCTTCCAAAGTCCTCTCCATCATCAAACCGTCTAAACTCTGTCTAACCACCAACCGCTTCTTCCGAGATGGAGCTATCAGATCTTCAAATTCTAATGTCGATGTCGATGTCACCATTGCCAACGATACCATCTTTGGCATCAATGGCCAGCCAATATTTTCGGTTGATGAGGCTGACTTGGACCGTCCGACAGAAGGGTTTTCGTCCATTGAGGAAGCTATTGAAGATGTTCGGAAGGGAAAGATGGTGGTGGTTGTTGACGATGAAGATCGAGAAAACGAAGGAGATCTTATAATGGCAGCTGAGACGGTGACGACAGAGGCGATGGCTTTCATCGTAAAGCATGGAACGGGGATTGTTTGTGTGGCGATGAAAGGAGAAGATTTAGAGAGGTTACAGATTCCATTAATGGTGGATCACAAGGATAACCAAGAAATGCTGTCTACTGCTTTTACCATCACTGTGGATGGAAGAGAGGGCACAACGACGGGAGTTTCAGCGGAGGATAGGGTGGCGACGGTGCTGGCATTGGCATCAAGACACTCAATACCATATGATTTTAAACGACCGGGTCATATCTTTCCGCTCAAATATAGAGAAGGAGGGGTTTTGAGAAGGCCTGGCCACACGGAAGCCTCCGTCGATCTAGCAGAGCTGGCTGGACTCTTTCCCGCCGGAATTCTCTGTGAGATCGTCGACGAGGATGGCTCCATGGCTAGGCTCCCAAAGCTTCGCCAGTTTGCTCAACATCATAGCCTCAAAATTATCTCCATTGCTGACTTGATCAGGTATAGGAGAAAGAGGGAGAAATTAATTGAGCGCATTGGAAATCCTACAAGGATTCCGACTTCATGGGGACCATTCAATGCATACTGTTACAAGTCTACATTAGATGGCATGGAACATATCGCAATGGTTAAGGGTAATATTGGTGATGGCAAAGAGATATTAGTGAGGGTGCACTCAGAATGCTTGACAGGAGACATATTTGGATCAGCAAGATGTGACTGTGGAAAGCAACTAGGTTTGGCAATGCGAAAGATTGAGGAAGGTGGGAAAGGAGTGTTGGTTTATCTTAGAGGCCAAGAAGGAAGAGGCATTGGTTTGGGCAATAAGCTTCTTGCATATAATTTACAAGATGCTGGTAGAGACACTGTTCAAGCAAATCAAGATTTGGGATTGCCTGTTGATTCTAGAGATTATACCCTCGCTGCACAAATTATAAAGGATCTTGGGGTGAGAACAATGAGGCTAATGACAAATAACCCAGCAAAGTACATGGGGCTAAAGGGGTATGGGTTGGCAATTTCAGGCAGAGTTCCTCTTGTAACCCCAATTACAAAGGAAAATAAAAGATACCTTGAGACTAAGAGAGCCAAAATGGGTCATGACTATGGCTTAGAATTCAATGGGGTGTTAAGTGCTCTAATGAATGTCAATAAAAAATAA 1587 45.43 MRAEVWQLAKMNDDEQRRPARRWKDLQAFAAIDNHVKPYTTTVLGPASKVLSIIKPSKLCLTTNRFFRDGAIRSSNSNVDVDVTIANDTIFGINGQPIFSVDEADLDRPTEGFSSIEEAIEDVRKGKMVVVVDDEDRENEGDLIMAAETVTTEAMAFIVKHGTGIVCVAMKGEDLERLQIPLMVDHKDNQEMLSTAFTITVDGREGTTTGVSAEDRVATVLALASRHSIPYDFKRPGHIFPLKYREGGVLRRPGHTEASVDLAELAGLFPAGILCEIVDEDGSMARLPKLRQFAQHHSLKIISIADLIRYRRKREKLIERIGNPTRIPTSWGPFNAYCYKSTLDGMEHIAMVKGNIGDGKEILVRVHSECLTGDIFGSARCDCGKQLGLAMRKIEEGGKGVLVYLRGQEGRGIGLGNKLLAYNLQDAGRDTVQANQDLGLPVDSRDYTLAAQIIKDLGVRTMRLMTNNPAKYMGLKGYGLAISGRVPLVTPITKENKRYLETKRAKMGHDYGLEFNGVLSALMNVNKK 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19447530 19459807 + CcPI632755_10g009170.1 Cco10g0917 189875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0917 528 Hamap GTP cyclohydrolase-2 [ribA]. 316 513 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cco10g0917 528 FunFam Bifunctional riboflavin biosynthesis protein RIBA 1 chloroplastic 104 317 - -
Cco10g0917 528 Gene3D DHBP synthase 102 318 - -
Cco10g0917 528 Pfam GTP cyclohydrolase II 325 487 IPR032677 -
Cco10g0917 528 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 117 310 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cco10g0917 528 SUPERFAMILY YrdC/RibB 112 315 IPR017945 -
Cco10g0917 528 SUPERFAMILY RibA-like 324 489 IPR036144 -
Cco10g0917 528 NCBIfam GTP cyclohydrolase II 325 509 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cco10g0917 528 CDD GTP_cyclohydro2 317 510 IPR000926 GO:0003935(InterPro)|GO:0009231(InterPro)
Cco10g0917 528 FunFam Riboflavin biosynthesis protein RibBA 319 490 - -
Cco10g0917 528 NCBIfam 3,4-dihydroxy-2-butanone-4-phosphate synthase 113 311 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cco10g0917 528 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 111 315 IPR000422 GO:0008686(InterPro)|GO:0009231(InterPro)
Cco10g0917 528 PANTHER GTP CYCLOHYDROLASE II-RELATED 113 509 - GO:0008686(PANTHER)|GO:0009231(PANTHER)|GO:0009507(PANTHER)
Cco10g0917 528 Gene3D GTP cyclohydrolase II 319 490 IPR036144 -
Cco10g0917 528 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 112 509 IPR016299 GO:0009231(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0917 K14652 - - csv:101222456 719.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0917 Cco-Chr10:19447530 Cco10g0919 Cco-Chr10:19578605 4.50E-189 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99