Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0929 ATGGTGATGGCCAGCGTTAAATCCATTGCTGATACACCCAACTTAACTTCCATTCCTTCCTCTTTCATCTTCGCCACCGACGACGACTGTAACGATGATGTCACCACCGATGATGCCCCGCAAGGCTCGGAAGATTCGATTCCCATCGTTGATTTTTCTCTCCTCATCAATGGTACTCCCCATCAACGAGCCAAAGTCGTGAATGAACTCGGGAAGGCCTGCGAGGATTGGGGCTTCTTCATGGTGGTGAATCATGGAGTGGGGGAGAAGTTGATGAAGGAGATGGTGGAAATTTGCAGAGAATTTTTTGATCTGAAAGAGGAAGAGAAGAGAGAGTATGAAACAAAGCATGTGCTTGACCCCATTAGATATGGCACCAGCTTCAATCCTAAGGTGGAGAAGGTCTTCTTTTGGAGAGATTATTTGAAAATCATGGTTCATCCCAAGTTTCACTCCCCAACTAGACCTACAAGATTCAGAGAGATCTTGGAAGAGTACTGCACAAGAATTAGAGAAATGACAAGAGAATTAGTGAGAGGAATCTCAGAGAGCTTGGGATTGGAAGAGTGTTGTTTGGAGAAAGCGGCAGATCTTGAGTCAAGTTCAATACTATTTGCAGCAAATTTGTATCCTTCATGTCCACAGCCAGAGCTTGCAAGGGGTTTACCATCTCATTCTGATCAATGCCTTCTCACCATTCTTCTTCAAAACCAAATTGCTGGCCTTCAAATATTACACCATCATAAATGGCTGAATGTCAATCCTATTCCCAACTCATTACTTGTTAATGTTGCTGATCAACTTGAGATCTTGAGCAATGGGAAGTACAAGAGCGTTTTGCATAGAGCAATGGTGAATGATAAGGCCACCAGGATTTCAATAGCAATGGCAGTTGGGCCATCCCCTGAAACAGTGGTTGGTCCTGCACCTCAATTGCAGTTGAAAGGCGACCGAGAGACGGAGAGAAATCATGGTGCTTCTCAATCGGCAGCTAAAAGACAGAGATATAGAGAGAAAACACATGTTTCTTCTCAACTGACGACCGAGAAACGAAGAGAAAAAGTGCAAACGGCTAGAGAGACGATGGAGAGACGACCGGAGAGTGATGTGGATGTCGGAGGAATGGTCAGAGATTATCAATTGGAGACACGTCGATGTCTGACACGAAAAGAGGAGAGGGAGGTTGATTCTGCAATGCCGGCTTAG 1206 44.94 MVMASVKSIADTPNLTSIPSSFIFATDDDCNDDVTTDDAPQGSEDSIPIVDFSLLINGTPHQRAKVVNELGKACEDWGFFMVVNHGVGEKLMKEMVEICREFFDLKEEEKREYETKHVLDPIRYGTSFNPKVEKVFFWRDYLKIMVHPKFHSPTRPTRFREILEEYCTRIREMTRELVRGISESLGLEECCLEKAADLESSSILFAANLYPSCPQPELARGLPSHSDQCLLTILLQNQIAGLQILHHHKWLNVNPIPNSLLVNVADQLEILSNGKYKSVLHRAMVNDKATRISIAMAVGPSPETVVGPAPQLQLKGDRETERNHGASQSAAKRQRYREKTHVSSQLTTEKRREKVQTARETMERRPESDVDVGGMVRDYQLETRRCLTRKEEREVDSAMPA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20196235 20199823 - CcPI632755_10g009290.1 Cco10g0929 189887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0929 401 MobiDBLite consensus disorder prediction 315 372 - -
Cco10g0929 401 MobiDBLite consensus disorder prediction 300 376 - -
Cco10g0929 401 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 157 IPR026992 -
Cco10g0929 401 Gene3D - 1 342 IPR027443 -
Cco10g0929 401 SUPERFAMILY Clavaminate synthase-like 5 313 - -
Cco10g0929 401 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 199 300 IPR005123 -
Cco10g0929 401 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 41 326 IPR050295 -
Cco10g0929 401 Pfam 2OG-Fe(II) oxygenase superfamily 205 298 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0929 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1785 Cco-Chr7:31998919 Cco10g0929 Cco-Chr10:20196235 1.80E-34 dispersed
Cco10g0929 Cco-Chr10:20196235 Cco10g1954 Cco-Chr10:33097563 4.20E-54 dispersed
Cco10g0929 Cco-Chr10:20196235 Cco07g1816 Cco-Chr7:32259146 5.70E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g975 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00905 Cam10g0930 Cec10g0971 Cco10g0929 Clacu10g0955 Cmu10g1739 Cre10g1113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003038 0 2 2 2 1 1 1 1 1 1 1 1 1 1 2 0 1 4 1 1 1 3 2 3 3 2 4 3 1 5 52