Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0938 ATGGAAATTGCTCTTTCTGGTTCTTCAGTTTCACAGTCTCTATTTCCCTCTTCCTTTCCTTCTCAGCAGCAGCAAAGGAGCTCCTTCAAGACCCCAGATATCTTTGAGTTTAAGCTGAAAACAAGGAAAATGGAGCACACCCATTTGAAATTGTCGACCACTGTCAACTGCGGCTCTGGACTGACTCAGAAAGTTGAAAATAACAAAATGAATGTTGTGATAGAAACCGAAAAGAGGCAGGACTTATTTGAGGAAATCAAACATCGATTTCTAAGCTTTAAAAGGAATACATATATGAAAAATTTAGAACATTTTCAGCGTCTTTCTGATGCTCAATCTCCAAAGTTTTTGGTGATTTCTTGTGCAGATTCTAGAGTTTGTCCCTCAAACGTTTTGGGTTTCCAACCTGGAGAAGCATTTCTTGTTCGAAATATAGCGAACTTGGTTATACCTTTCGAGAATGGGCCCTCAGAAACACAAGCTGCACTGCAGTTTTCTGTTAATACGCTCGAAGTTGAAAACATTTTCGTCATTGGCCATAGCTGTTGTGGGGGCATTCGTGCACTTATGAGTATGCAAGATGAAAAACCGAGCTGTTTTATCACAAATTGGGTTATTAATGGGAAGAATGCAAAAATGAGGACAAAGGCTGCTGCTTCCACCCTCAACTTTGACCAGCAATGCAGACACTGTGAGAAGGAATCGCTCAACAATTCGTTGCTGAACTTGCTGACATACCCTTGGATTGAAGAAAAGGTAAAGAAAGGAAGTCTCTCCATTCATGGTGGCTACTACGACTTTGTCAATTATTTTCTTAAAATAATTAGACTTCTTGGACCAACTCATGAGGCAAGAGAAGAAGTTGTAGGAGGAGGGAAGAATGGGAGCGATGATGGAAGTGTGGTCCGGATTGATGGGAGGGATGGCAAGTTTGGAAGTGAAGTTGTCGGGAGAGGAGGCAACACTAGTTTGGTCGGGATGTTCATGGGGAAGCTTGGAAGTGGAGGAAGTGTAAGCTTAGGGAGCGAAGGTTGTGGGAAGTTTGGGATGAATGGAATAGTTGGACCGGGCGTAGGGTTTGGCAAGATTGGCAATAGTGGTAGAGGTGGTATTGCAAATGGCTTCGGTAGCGATGACATTGGAGGCATTGGTGGCATTGGTGGCAAATTTGGAATTGCCTGTAGAAGATGTCGAGTAGTTCGAGCAGCATCGACGCTTGAAAATGTCAAAGCAATGACGAAGGCGAGGATGAAGTAG 1257 43.2 MEIALSGSSVSQSLFPSSFPSQQQQRSSFKTPDIFEFKLKTRKMEHTHLKLSTTVNCGSGLTQKVENNKMNVVIETEKRQDLFEEIKHRFLSFKRNTYMKNLEHFQRLSDAQSPKFLVISCADSRVCPSNVLGFQPGEAFLVRNIANLVIPFENGPSETQAALQFSVNTLEVENIFVIGHSCCGGIRALMSMQDEKPSCFITNWVINGKNAKMRTKAAASTLNFDQQCRHCEKESLNNSLLNLLTYPWIEEKVKKGSLSIHGGYYDFVNYFLKIIRLLGPTHEAREEVVGGGKNGSDDGSVVRIDGRDGKFGSEVVGRGGNTSLVGMFMGKLGSGGSVSLGSEGCGKFGMNGIVGPGVGFGKIGNSGRGGIANGFGSDDIGGIGGIGGKFGIACRRCRVVRAASTLENVKAMTKARMK 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20509999 20515024 - CcPI632755_10g009380.1 Cco10g0938 189896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0938 418 FunFam Carbonic anhydrase 78 279 - -
Cco10g0938 418 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 121 128 IPR015892 GO:0004089(InterPro)|GO:0008270(InterPro)|GO:0015976(InterPro)
Cco10g0938 418 SMART Pro_CA_2 109 276 IPR001765 GO:0004089(InterPro)|GO:0008270(InterPro)
Cco10g0938 418 Gene3D Carbonic anhydrase 72 277 IPR036874 GO:0004089(InterPro)|GO:0008270(InterPro)
Cco10g0938 418 MobiDBLite consensus disorder prediction 1 27 - -
Cco10g0938 418 Pfam Carbonic anhydrase 117 267 IPR001765 GO:0004089(InterPro)|GO:0008270(InterPro)
Cco10g0938 418 CDD beta_CA_cladeB 89 269 IPR045066 GO:0004089(InterPro)|GO:0008270(InterPro)
Cco10g0938 418 PANTHER CARBONIC ANHYDRASE 43 269 IPR001765 GO:0004089(InterPro)|GO:0008270(InterPro)
Cco10g0938 418 SUPERFAMILY beta-carbonic anhydrase, cab 75 275 IPR036874 GO:0004089(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0938 K01673 - - csv:101214659 469.929
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1326 Cco-Chr8:25138692 Cco10g0938 Cco-Chr10:20509999 2.90E-73 dispersed
Cco10g0938 Cco-Chr10:20509999 Cco10g1407 Cco-Chr10:27157123 4.10E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g954 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00920 Cam10g0940 Cec10g0979 Cco10g0938 Clacu10g0965 Cmu10g1748 Cre10g1124 . . . . . . . . . . . . . . . . . . Cmo16g00295 . . . . Cpe14g00229 Cpe01g00595 . . . . . . . . . . . . . . . . . Cme07g02244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001553 2 9 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 4 3 2 2 2 3 2 1 2 3 4 2 2 71