Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0939 AAAACCCAGAAGGACAACATAGAAATACACGAGGTGGAAAATAAATTTTGGGAGGAAAAAAGGGGAAAAAAAATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGGGTTCACAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCGAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAGTGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTTGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGGCACAAAGTTAGGCACTTCTCTGCAGCAACTTGGCAATGCAAAACTCAGCCTTCTCTAATGGAAGCTTTACTAATCTCATGGACTTCCAAGCCACAATCCTATTTGCATAGAGAAATTAAAGGATGTGAAAAAGGCATTGCATCAGCTTACCATGGGATCGTACCTTCAATCTCTAAGGAGGAAGGTCATGCTAACCTTTTAGCTGAGATCATTTTGGCATATGAAACTCCTTTTGCTTTCAAGGTTTATTGTAACACTAAATCACCTATTTATTGTAACACTAAATCACCTATCTCTTGGGACATTGTTAGATAG 1044 38.7 KTQKDNIEIHEVENKFWEEKRGKKMTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQGSQLEKSAHAKLTEEFAAKTEELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKVETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGHKVRHFSAATWQCKTQPSLMEALLISWTSKPQSYLHREIKGCEKGIASAYHGIVPSISKEEGHANLLAEIILAYETPFAFKVYCNTKSPIYCNTKSPISWDIVR 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20524499 20532949 + CcPI632755_10g009390.1 Cco10g0939 189897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0939 347 Coils Coil 173 207 - -
Cco10g0939 347 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 Coils Coil 147 167 - -
Cco10g0939 347 SUPERFAMILY SRF-like 26 104 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 CDD MADS_MEF2_like 27 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco10g0939 347 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 Pfam K-box region 113 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g0939 347 ProSiteProfiles K-box domain profile. 110 200 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g0939 347 Gene3D - 39 98 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 225 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco10g0939 347 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0939 347 MobiDBLite consensus disorder prediction 212 236 - -
Cco10g0939 347 SMART madsneu2 25 84 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1324 Cco-Chr8:25095851 Cco10g0939 Cco-Chr10:20524499 2.60E-46 dispersed
Cco09g1786 Cco-Chr9:30526242 Cco10g0939 Cco-Chr10:20524499 2.00E-22 dispersed
Cco10g0939 Cco-Chr10:20524499 Cco10g0961 Cco-Chr10:20860110 2.10E-25 dispersed
Cco10g0939 Cco-Chr10:20524499 Cco04g1600 Cco-Chr4:31320580 8.70E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60092 PF01486 K-box 1.30E-15 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0939 - - - 0.0