Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0953 ATGGCTTCCGCCGTCTTAGCTAACCGAAACGAAACCAATTGGCCGCAGCCGAGGGGCAACGGTCGCGGTACGGAAGAAGGATTCATGGGTAAAGTACCTTTTTCAAACCCTAACCCTAAATTTAACAAGAAACAGTTTCACGGCGAGATGAATGGTTTCCAGATGGATGATTCTCCGGCTGTGACTCAATCAGTGTCAGATGATGCCTCGTCGATTAATCATCATCGCAGATTATCCAACGGCATCGATTTCAGTCAATACGTGAGCTTCAACGTTTTATCGTGTTCGAGGAAGGAGCTGATCGAGCTGAAAACAAAGTTAATTTCCGAGCTAGAACAGATTCGGCAATTGAAAAGTCGCATCAATTCAGGTGAACTACATTCCAGACCAACACACCAGAAAAAATCGTCAAAAACATCAGGAACCAAGCGGCCTTTGCCAACGTCGAGCAACGGTATGGAGTTGAAGCGGTCTAATTCAGAAAACGGAAATCTGATGAAGACTTGCTCACAGATTTTGACAAAACTCATGAAGCACAAACATGGCTGGATCTTCAACAAGCCGGTCGATGTGGTTGGGATGGGCCTTCACGATTACTATGACATCGTCAAGCGTCCTATGGATTTAGGATCCGTGAAAGCCAAGTTGAGCAAAGATGCGTATGAATCACCGTTCGATTTTGCTTCCGACGTGAGGTTGACCTTCAAGAACGCGATGACCTACAATCCCAAGGGCCACGATGTGCACGCCATGGCAGAACAATTACTGATAAGATTTGAGGAATTGTTTCGACCTGTGGGTGAACTGCTCGAAGAAGAAGATCGGCGGTTCCGTGGCTACCAGGAAGAGTTGCCAGCGAGTTCATGGAATCACTCAGAGGCTGAAAGAACGGTGAAGAAGGATAATACCCAGAAGCAAATTGTGAAGAAGACAGAGCCAATGAAAGCTCCGTCAAGCTCTTCTAACCCGCCTATGATGCAGTCACCTGTTAAAACTCCCTCACCTCTACGAGCACCGCCTGTAAAGCCGTTGAAGCAGCCGAAACCAAGAGCTAAAGATCCTAATAAGAGAGAAATGACTCTCGAAGAGAAGCACAAGTTGGGAATTGGTTTGCAGAGTTTGCCACCAGAGAAAATGGAACAAGTAGTGCAAATCATAAAGAAGAGAAATGGTCACTTGAAACAGGATGGGGACGAGATTGAGCTCGACATTGAAGCTGTAGATACAGAAACACTTTGGGAGCTCGATCGATTAGTCACAAACTGGAAGAAGATGATGAGCAAGATCAAACGACAGGCTCTAATCACCGCAGCATCCATCAAACCCAATGGGGTTTTACCTATCCCTGAGAAAATTGAAGTGGGTTCCGAAACGAAAAAGCAACGGAGAGGGGAGGCTGGTGAGGAAGATGTGGACATCGGCGATGAAATGCCTGCAAGCAATTTTCCACCGGTGGAGATCGAGAAAGATGCCGGAGGAGGCCATGCTAGCAGTAGTTCCAGCGGCTCCAGTAGTTCAAGCAGCGATGATTCTTCCTCTTCCAGTGATTCGGATTCCGAAGGCAGTTCTTCTGGGAGCGATTCCGATGACAATGCACAATGA 1602 47.0 MASAVLANRNETNWPQPRGNGRGTEEGFMGKVPFSNPNPKFNKKQFHGEMNGFQMDDSPAVTQSVSDDASSINHHRRLSNGIDFSQYVSFNVLSCSRKELIELKTKLISELEQIRQLKSRINSGELHSRPTHQKKSSKTSGTKRPLPTSSNGMELKRSNSENGNLMKTCSQILTKLMKHKHGWIFNKPVDVVGMGLHDYYDIVKRPMDLGSVKAKLSKDAYESPFDFASDVRLTFKNAMTYNPKGHDVHAMAEQLLIRFEELFRPVGELLEEEDRRFRGYQEELPASSWNHSEAERTVKKDNTQKQIVKKTEPMKAPSSSSNPPMMQSPVKTPSPLRAPPVKPLKQPKPRAKDPNKREMTLEEKHKLGIGLQSLPPEKMEQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKIKRQALITAASIKPNGVLPIPEKIEVGSETKKQRRGEAGEEDVDIGDEMPASNFPPVEIEKDAGGGHASSSSSGSSSSSSDDSSSSSDSDSEGSSSGSDSDDNAQ 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20735619 20737387 + CcPI632755_10g009530.1 Cco10g0953 189911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0953 533 MobiDBLite consensus disorder prediction 313 327 - -
Cco10g0953 533 MobiDBLite consensus disorder prediction 453 469 - -
Cco10g0953 533 Gene3D - 352 429 IPR038336 -
Cco10g0953 533 SMART bromo_6 158 268 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 Pfam Bromodomain extra-terminal - transcription regulation 358 420 IPR027353 -
Cco10g0953 533 MobiDBLite consensus disorder prediction 287 357 - -
Cco10g0953 533 MobiDBLite consensus disorder prediction 121 162 - -
Cco10g0953 533 MobiDBLite consensus disorder prediction 451 533 - -
Cco10g0953 533 ProSiteProfiles Bromodomain profile. 177 249 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 MobiDBLite consensus disorder prediction 1 19 - -
Cco10g0953 533 MobiDBLite consensus disorder prediction 1 24 - -
Cco10g0953 533 Coils Coil 97 120 - -
Cco10g0953 533 PRINTS Bromodomain signature 196 212 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 PRINTS Bromodomain signature 230 249 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 PRINTS Bromodomain signature 180 193 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 PRINTS Bromodomain signature 212 230 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
Cco10g0953 533 CDD Bromo_plant1 165 261 IPR037377 -
Cco10g0953 533 MobiDBLite consensus disorder prediction 328 345 - -
Cco10g0953 533 MobiDBLite consensus disorder prediction 293 308 - -
Cco10g0953 533 Pfam Bromodomain 169 253 IPR001487 GO:0005515(InterPro)
Cco10g0953 533 MobiDBLite consensus disorder prediction 140 162 - -
Cco10g0953 533 SUPERFAMILY Bromodomain 165 270 IPR036427 GO:0005515(InterPro)
Cco10g0953 533 Gene3D - 123 283 IPR036427 GO:0005515(InterPro)
Cco10g0953 533 PANTHER OSJNBA0053K19.4 PROTEIN 57 528 - -
Cco10g0953 533 MobiDBLite consensus disorder prediction 494 533 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0953 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1972 Cco-Chr6:29866858 Cco10g0953 Cco-Chr10:20735619 5.70E-47 dispersed
Cco09g1862 Cco-Chr9:31838763 Cco10g0953 Cco-Chr10:20735619 1.60E-139 dispersed
Cco09g2250 Cco-Chr9:36758754 Cco10g0953 Cco-Chr10:20735619 1.90E-27 dispersed
Cco10g0953 Cco-Chr10:20735619 Cco09g1142 Cco-Chr9:10958371 7.50E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80