Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0961 | ATGAACTTGAATTGGACGTCTCTCTCCAGAAAAGCTACAAAAGAAGAAGCAAATCCACAGACCCTTAAGCAAAGGGAAAAAAACATGGGAAGAGGGAAGATTGTGATAAGAAGAATAGACAATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGATTATTGAAAAAGGCTAGAGAGCTTTCAATTCTTTGTGATGCTGAAGTTGGATTGATCATTTTTTCGAGCACTGGCAAACTCTATGATTATTCCAGCTCCAGCATAAGGTCGATTACCGATCGCTACAACAAGATGAAAGACGAGCAAAATCAGCTAATGAACTCTGTTTCCGAACTCCAGTTTTGGAAAAGAGAGGCAACTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGACTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGTACCAGGGATAAAGCTGGGATCCATCACATCTGGTATGCAGTGGTCTTCAGACTCTATATATGCGATAAATTTAGCAGCCAGACCAGCTACATATGTTTTCTATCTCCTTTCAATATCCCAAAGGTTGGTTTGTATAGAAAAAGAAATCTTATTCCTTCAGCTACATGGTAATGTGAAACCCAAAGGACCTCTGACTTTCCAGAGAGAGGAGATGACATCATTTCCCCCAACTTAA | 1005 | 39.8 | MNLNWTSLSRKATKEEANPQTLKQREKNMGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKDEQNQLMNSVSELQFWKREATALKQQLHYLQECHRQLMGEELSGLTVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPVPGIKLGSITSGMQWSSDSIYAINLAARPATYVFYLLSISQRLVCIEKEILFLQLHGNVKPKGPLTFQREEMTSFPPT | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 20860110 | 20876684 | - | CcPI632755_10g009610.1 | Cco10g0961 | 189919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0961 | 334 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cco10g0961 | 334 | Pfam | K-box region | 111 | 198 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco10g0961 | 334 | SMART | madsneu2 | 29 | 88 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | Coils | Coil | 191 | 211 | - | - | |
Cco10g0961 | 334 | FunFam | MADS-box transcription factor MADS-MC | 41 | 113 | - | - | |
Cco10g0961 | 334 | SUPERFAMILY | SRF-like | 30 | 118 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | Gene3D | - | 41 | 122 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | ProSiteProfiles | MADS-box domain profile. | 29 | 89 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 29 | 227 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco10g0961 | 334 | PRINTS | MADS domain signature | 51 | 66 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | PRINTS | MADS domain signature | 66 | 87 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | PRINTS | MADS domain signature | 31 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | ProSitePatterns | MADS-box domain signature. | 31 | 85 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0961 | 334 | ProSiteProfiles | K-box domain profile. | 114 | 204 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco10g0961 | 334 | Coils | Coil | 100 | 120 | - | - | |
Cco10g0961 | 334 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cco10g0961 | 334 | CDD | MADS_MEF2_like | 30 | 104 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco10g0961 | 334 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 38 | 85 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g2226 | Cco-Chr4:35831197 | Cco10g0961 | Cco-Chr10:20860110 | 1.40E-13 | dispersed | |
Cco08g1206 | Cco-Chr8:23785466 | Cco10g0961 | Cco-Chr10:20860110 | 3.50E-32 | dispersed | |
Cco08g1207 | Cco-Chr8:23798980 | Cco10g0961 | Cco-Chr10:20860110 | 3.30E-32 | dispersed | |
Cco10g0939 | Cco-Chr10:20524499 | Cco10g0961 | Cco-Chr10:20860110 | 2.10E-25 | dispersed | |
Cco10g0961 | Cco-Chr10:20860110 | Cco11g1527 | Cco-Chr11:28128783 | 7.10E-31 | dispersed | |
Cco10g0961 | Cco-Chr10:20860110 | Cco04g1582 | Cco-Chr4:31196782 | 1.20E-57 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60093 | PF01486 | K-box | 4.60E-26 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0961 | K09264 | - | csv:101203098 | 412.535 |