Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0961 ATGAACTTGAATTGGACGTCTCTCTCCAGAAAAGCTACAAAAGAAGAAGCAAATCCACAGACCCTTAAGCAAAGGGAAAAAAACATGGGAAGAGGGAAGATTGTGATAAGAAGAATAGACAATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGATTATTGAAAAAGGCTAGAGAGCTTTCAATTCTTTGTGATGCTGAAGTTGGATTGATCATTTTTTCGAGCACTGGCAAACTCTATGATTATTCCAGCTCCAGCATAAGGTCGATTACCGATCGCTACAACAAGATGAAAGACGAGCAAAATCAGCTAATGAACTCTGTTTCCGAACTCCAGTTTTGGAAAAGAGAGGCAACTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGACTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGTACCAGGGATAAAGCTGGGATCCATCACATCTGGTATGCAGTGGTCTTCAGACTCTATATATGCGATAAATTTAGCAGCCAGACCAGCTACATATGTTTTCTATCTCCTTTCAATATCCCAAAGGTTGGTTTGTATAGAAAAAGAAATCTTATTCCTTCAGCTACATGGTAATGTGAAACCCAAAGGACCTCTGACTTTCCAGAGAGAGGAGATGACATCATTTCCCCCAACTTAA 1005 39.8 MNLNWTSLSRKATKEEANPQTLKQREKNMGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKDEQNQLMNSVSELQFWKREATALKQQLHYLQECHRQLMGEELSGLTVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPVPGIKLGSITSGMQWSSDSIYAINLAARPATYVFYLLSISQRLVCIEKEILFLQLHGNVKPKGPLTFQREEMTSFPPT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20860110 20876684 - CcPI632755_10g009610.1 Cco10g0961 189919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0961 334 MobiDBLite consensus disorder prediction 1 21 - -
Cco10g0961 334 Pfam K-box region 111 198 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g0961 334 SMART madsneu2 29 88 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 Coils Coil 191 211 - -
Cco10g0961 334 FunFam MADS-box transcription factor MADS-MC 41 113 - -
Cco10g0961 334 SUPERFAMILY SRF-like 30 118 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 Gene3D - 41 122 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 227 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco10g0961 334 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g0961 334 ProSiteProfiles K-box domain profile. 114 204 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g0961 334 Coils Coil 100 120 - -
Cco10g0961 334 MobiDBLite consensus disorder prediction 1 15 - -
Cco10g0961 334 CDD MADS_MEF2_like 30 104 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco10g0961 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2226 Cco-Chr4:35831197 Cco10g0961 Cco-Chr10:20860110 1.40E-13 dispersed
Cco08g1206 Cco-Chr8:23785466 Cco10g0961 Cco-Chr10:20860110 3.50E-32 dispersed
Cco08g1207 Cco-Chr8:23798980 Cco10g0961 Cco-Chr10:20860110 3.30E-32 dispersed
Cco10g0939 Cco-Chr10:20524499 Cco10g0961 Cco-Chr10:20860110 2.10E-25 dispersed
Cco10g0961 Cco-Chr10:20860110 Cco11g1527 Cco-Chr11:28128783 7.10E-31 dispersed
Cco10g0961 Cco-Chr10:20860110 Cco04g1582 Cco-Chr4:31196782 1.20E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60093 PF01486 K-box 4.60E-26 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0961 K09264 - csv:101203098 412.535