Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0963 ATGGACGAAATTTCGACTTTTGAGGTGCCGGATGGCTTCAAGATACTAGATGGTGATGCACTAGTTATCTTGAGAACCATGAGCAAAGGTTCTGCCATTGGAGGTGCTTTGCTTCGTGGCTTGGAATATCTCTTATTAGGTATATTTGTGCAGGAAAAAATGGCAGCTACTCACAACTTATCTTCCGCTGCACTTTCATCGTCTTCATCCGCATTCTTTTCACATTCCACTTTCAATGCCAAGAATCCGAAGATATCGTTTCCGGGGAAAAGCGCCGGCATTTGCAAGTGTGTTGCAACGTCTCAAGATTCCACGACCGCTTACAAAACAGCGGTCTCTCGAAATGCAAACATGGCCAAACTTCAAGCTGGCTATCTTTTCCCTGAGATTGCAAGGAGAAGGACTGCTCATTTGCTCAAGTATCCTGATGCAAAAATAATTAGCCTTGGAATCGGTGACACTACTGAGCCTATTCCTGAGGTTATTACGTCGGCCATGGCAAAGAGATCACATGCATTGTCCACACTGGAGGGTTACAGTGGCTATGGGGCTGAGCAGGGGGAAAAGCCAGTGAGAACTTTAATTGGGAAAACATTTTATGATGACCTTGGCATAGAAGAAGATGATATCTTCGTCTCTGATGGTGCAAAATGTGATATAACACGTCTTCAGCTTGTTTTTGGATCCAACGTGTCAATGGCAGTGCAAGACCCATCATACCCGGCTTATGTGGACTCGAGCGTCATCTTGGGGCAGACTGGACTGTACCAGAAGGATGTTGAAAAATATGGGAACATTGAATACATGAGGTGTACACCAGAAAATGGATTTTTTCCCGATCTATCTAAGGTTTCCCGGACAGATATCATATTTTTCTGTTCACCAAACAATCCTACCGGCTCTTCTGCAACTAGGGAACAGTTGACCCAACTGGTGCAGTTTGCTAAGAAGAATGGATCAATTATAGTCTATGATTCAGCATATGCAATGTATATATCAGACGATAATCCAAAATCTATCTTTGAAATTCCTGGAGCGAAGGAGGTTGCAATTGAGACATCATCATTTAGTAAATATGCTGGATTTACTGGGGTTCGTCTTGGTTGGACAGTTGTTCCAAAGGAGCTTCTGTTTTCTGATGGATTTCCCGTTGCTAAAGATTTCAACCGCATTGTTTGTACTTGCTTCAACGGTGCATCCAACATTGCCCAAGCTGGGGGCTTGGCTTGTCTTTCTCCAGAAGGGCTTGAGGCTATGCGCGGGGTTATTGGGTTTTACAAAGAAAATACTAGCATCATAATGGACACATTTAACTCGCTTGGATTTAATGTGTATGGAGGGAAGAATGCACCGTATGTGTGGGTTCATTTCCCTGGCTGGAGTTCGTGGGATGTATTTGCTGAGATACTGGAGAAAACACATGTCGTGACAACACCCGGTAGTGGTTTCGGACCTGGTGGCGAAGGATTTATCAGGGTAAGTGCTTTTGGTCACAGGGAGAATGTTTTGGAAGCCTGCAGAAGATTCAAGCAGCTATACAAGTGA 1545 44.08 MDEISTFEVPDGFKILDGDALVILRTMSKGSAIGGALLRGLEYLLLGIFVQEKMAATHNLSSAALSSSSSAFFSHSTFNAKNPKISFPGKSAGICKCVATSQDSTTAYKTAVSRNANMAKLQAGYLFPEIARRRTAHLLKYPDAKIISLGIGDTTEPIPEVITSAMAKRSHALSTLEGYSGYGAEQGEKPVRTLIGKTFYDDLGIEEDDIFVSDGAKCDITRLQLVFGSNVSMAVQDPSYPAYVDSSVILGQTGLYQKDVEKYGNIEYMRCTPENGFFPDLSKVSRTDIIFFCSPNNPTGSSATREQLTQLVQFAKKNGSIIVYDSAYAMYISDDNPKSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKELLFSDGFPVAKDFNRIVCTCFNGASNIAQAGGLACLSPEGLEAMRGVIGFYKENTSIIMDTFNSLGFNVYGGKNAPYVWVHFPGWSSWDVFAEILEKTHVVTTPGSGFGPGGEGFIRVSAFGHRENVLEACRRFKQLYK 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20931265 20942584 - CcPI632755_10g009630.1 Cco10g0963 189921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0963 514 FunFam LL-diaminopimelate aminotransferase, chloroplastic 401 510 - -
Cco10g0963 514 CDD AAT_like 147 511 - -
Cco10g0963 514 Gene3D Aspartate Aminotransferase, domain 1 126 510 IPR015422 -
Cco10g0963 514 Gene3D - 156 413 IPR015421 -
Cco10g0963 514 PANTHER AMINOTRANSFERASE 54 514 IPR019942 GO:0008483(InterPro)|GO:0009089(PANTHER)|GO:0009507(PANTHER)|GO:0010285(PANTHER)
Cco10g0963 514 FunFam LL-diaminopimelate aminotransferase, chloroplastic 156 413 - -
Cco10g0963 514 NCBIfam LL-diaminopimelate aminotransferase 113 511 IPR019942 GO:0008483(InterPro)
Cco10g0963 514 SUPERFAMILY PLP-dependent transferases 125 509 IPR015424 -
Cco10g0963 514 Hamap LL-diaminopimelate aminotransferase [dapL]. 113 512 IPR019942 GO:0008483(InterPro)
Cco10g0963 514 Pfam Aminotransferase class I and II 145 509 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0963 K10206 - - csv:101217452 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g0963 Cco-Chr10:20931265 Cco11g0782 Cco-Chr11:8929733 3.50E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g813 . . . . . . Bma05g00631 . . . . . . . . . . . . . . . . . Cla10g00945 Cam10g0968 Cec10g1002 Cco10g0963 Clacu10g0990 Cmu10g1773 Cre10g1147 Cone12ag1018 Cone8ag1048 . . . . . . . Blo13g00238 . . . Bpe05g00455 . . . Cmo04g00449 . . . . . Cpe14g00243 Cpe01g00377 Bhi11g01087 . . . Hepe07g0382 Mch10g0394 . . . . . . . . Lsi03g00994 . . Cme07g02224
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006830 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37