Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g0973 | ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGTCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTGTGTGGTGCTGAGATTGCCATCATCGTCTTCTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCTTGCGTTGAGGCTCTCATCGAACGCTTTGTGACACGAAACCCTCCACCGAGCTCCGGTACGCTGCAGCTAATCGAAGCCCACCGGAATGCCAATGTTCGAGAACTGAATGCACAACTTACTCAAGTGCTGAGCCAGCTTGAAATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCATCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA | 663 | 50.68 | MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLSQLEMERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNANPPPQFFPTPSTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 21076500 | 21077615 | - | CcPI632755_10g009730.1 | Cco10g0973 | 189931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g0973 | 220 | ProSiteProfiles | MADS-box domain profile. | 5 | 65 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | Coils | Coil | 138 | 165 | - | - | |
Cco10g0973 | 220 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 15 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | PRINTS | MADS domain signature | 27 | 42 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | PRINTS | MADS domain signature | 7 | 27 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | PRINTS | MADS domain signature | 42 | 63 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | SUPERFAMILY | SRF-like | 6 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | Gene3D | - | 17 | 81 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | Coils | Coil | 93 | 130 | - | - | |
Cco10g0973 | 220 | Gene3D | - | 83 | 175 | - | - | |
Cco10g0973 | 220 | SMART | madsneu2 | 5 | 64 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco10g0973 | 220 | FunFam | Agamous-like MADS-box protein AGL62 | 17 | 83 | - | - | |
Cco10g0973 | 220 | CDD | MADS_MEF2_like | 6 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco10g0973 | 220 | PANTHER | MADS BOX PROTEIN | 6 | 157 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0749 | Cco-Chr3:7765923 | Cco10g0973 | Cco-Chr10:21076500 | 1.40E-22 | dispersed | |
Cco06g0871 | Cco-Chr6:10738773 | Cco10g0973 | Cco-Chr10:21076500 | 5.30E-30 | dispersed | |
Cco10g0973 | Cco-Chr10:21076500 | Cco04g1600 | Cco-Chr4:31320580 | 2.00E-13 | dispersed | |
Cco10g0973 | Cco-Chr10:21076500 | Cco04g2226 | Cco-Chr4:35831197 | 1.60E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60094 | PF00319 | SRF-TF | 3.50E-24 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g0973 | - | - | - | 0.0 |