Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0991 ATGATATTGGAAAATCTAGAGCAACCCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAATTTATGGAGAAAAATTAGGAATCAAAAGAGGCTCACCAAAATATGTAAAATTTATAAATCTCAACGAGCGACAGAGAGAAACAGAATTCAGAGAGGGCGTATTGTTCTACCCATGCTGCAAATTTCAACGGAATTTTGAATGTTCGAGGCTTCAAAAACCTAACTCATACCATTATTCCCTCTGCATAACTAAGTTGGCCTTGGGCAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGACGAATTGCCAGAAGTGAAGTCTGTTTCTCTTTCCTCAGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTGGGAAAAAAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGATGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 1350 41.93 MILENLEQPQEEEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDDDDDDDDDDDDDDDEIYGEKLGIKRGSPKYVKFINLNERQRETEFREGVLFYPCCKFQRNFECSRLQKPNSYHYSLCITKLALGKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEVKSVSLSSDIKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21443006 21451683 + CcPI632755_10g009910.1 Cco10g0991 189949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0991 449 Coils Coil 242 264 - -
Cco10g0991 449 ProSiteProfiles Myb-like domain profile. 128 179 IPR001005 -
Cco10g0991 449 PANTHER SINGLE MYB HISTONE 4 129 443 IPR044597 GO:0003691(InterPro)
Cco10g0991 449 MobiDBLite consensus disorder prediction 1 65 - -
Cco10g0991 449 MobiDBLite consensus disorder prediction 7 60 - -
Cco10g0991 449 FunFam Telomere repeat-binding factor 1 130 208 - -
Cco10g0991 449 Coils Coil 3 36 - -
Cco10g0991 449 SMART sant 126 181 IPR001005 -
Cco10g0991 449 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 268 340 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco10g0991 449 SUPERFAMILY Winged helix DNA-binding domain 275 346 IPR036390 -
Cco10g0991 449 Gene3D - 130 214 - -
Cco10g0991 449 MobiDBLite consensus disorder prediction 234 256 - -
Cco10g0991 449 Coils Coil 392 429 - -
Cco10g0991 449 SMART h15plus2 270 335 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco10g0991 449 Pfam linker histone H1 and H5 family 276 333 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco10g0991 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 155 IPR017930 -
Cco10g0991 449 FunFam Telomere repeat-binding factor 1 126 180 - -
Cco10g0991 449 SUPERFAMILY Homeodomain-like 127 192 IPR009057 -
Cco10g0991 449 Gene3D - 273 348 IPR036388 -
Cco10g0991 449 Pfam Myb-like DNA-binding domain 128 178 IPR001005 -
Cco10g0991 449 CDD SANT_TRF 129 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0991 K09422 - - csv:101218411 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1520 Cco-Chr4:30602213 Cco10g0991 Cco-Chr10:21443006 1.70E-44 dispersed
Cco07g0070 Cco-Chr7:680363 Cco10g0991 Cco-Chr10:21443006 3.10E-06 dispersed
Cco10g0991 Cco-Chr10:21443006 Cco07g1466 Cco-Chr7:28775908 1.20E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0991 . 129 448 Single Myb Histone (SMH) Gene Family AT1G49950 59.0 6.8e-73 271.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60095 PF00538 Linker_histone 2.10E-07 CL0123 Cco TF