Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0991 ATGATATTGGAAAATCTAGAGCAACCCCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAATTTATGGAGAAAAATTAGGAATCAAAAGAGGCTCACCAAAATATGTAAAATTTATAAATCTCAACGAGCGACAGAGAGAAACAGAATTCAGAGAGGGCGTATTGTTCTACCCATGCTGCAAATTTCAACGGAATTTTGAATGTTCGAGGCTTCAAAAACCTAACTCATACCATTATTCCCTCTGCATAACTAAGTTGGCCTTGGGCAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGACGAATTGCCAGAAGTGAAGTCTGTTTCTCTTTCCTCAGATATCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTGGGAAAAAAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGATGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 1350 41.93 MILENLEQPQEEEEEEEEEEEEEEEEEEEEDDDDDDDDDDDDDDDDDDDDDDDDDDDDEIYGEKLGIKRGSPKYVKFINLNERQRETEFREGVLFYPCCKFQRNFECSRLQKPNSYHYSLCITKLALGKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEVKSVSLSSDIKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRWEKRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21443006 21451683 + CcPI632755_10g009910.1 Cco10g0991 189949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0991 449 Coils Coil 242 264 - -
Cco10g0991 449 ProSiteProfiles Myb-like domain profile. 128 179 IPR001005 -
Cco10g0991 449 PANTHER SINGLE MYB HISTONE 4 129 443 IPR044597 GO:0003691(InterPro)
Cco10g0991 449 MobiDBLite consensus disorder prediction 1 65 - -
Cco10g0991 449 MobiDBLite consensus disorder prediction 7 60 - -
Cco10g0991 449 FunFam Telomere repeat-binding factor 1 130 208 - -
Cco10g0991 449 Coils Coil 3 36 - -
Cco10g0991 449 SMART sant 126 181 IPR001005 -
Cco10g0991 449 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 268 340 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco10g0991 449 SUPERFAMILY Winged helix DNA-binding domain 275 346 IPR036390 -
Cco10g0991 449 Gene3D - 130 214 - -
Cco10g0991 449 MobiDBLite consensus disorder prediction 234 256 - -
Cco10g0991 449 Coils Coil 392 429 - -
Cco10g0991 449 SMART h15plus2 270 335 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco10g0991 449 Pfam linker histone H1 and H5 family 276 333 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cco10g0991 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 155 IPR017930 -
Cco10g0991 449 FunFam Telomere repeat-binding factor 1 126 180 - -
Cco10g0991 449 SUPERFAMILY Homeodomain-like 127 192 IPR009057 -
Cco10g0991 449 Gene3D - 273 348 IPR036388 -
Cco10g0991 449 Pfam Myb-like DNA-binding domain 128 178 IPR001005 -
Cco10g0991 449 CDD SANT_TRF 129 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1520 Cco-Chr4:30602213 Cco10g0991 Cco-Chr10:21443006 1.70E-44 dispersed
Cco07g0070 Cco-Chr7:680363 Cco10g0991 Cco-Chr10:21443006 3.10E-06 dispersed
Cco10g0991 Cco-Chr10:21443006 Cco07g1466 Cco-Chr7:28775908 1.20E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60095 PF00538 Linker_histone 2.10E-07 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0991 K09422 - csv:101218411 486.493