Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g0992 ATGAACATTCTCAAAGCTTTCAGACTCCTTTTGCTTCCTTTAATTTTGATATTTTCAGGGAAATCCATTATTACCATTCAAGGTTTCTCCTATGATTATTCTGCCACAACGAAGGCAAGTTGTTTGGCAAAGCCAAGGAGGGTTTATAATGGGGGAGGAATCATAGTGAATCCAGAGTTCAACAATGGAATTGAGGGTTGGAAAGTGTTTGGAGGAGGAGAAATAAAGCAAGGGTGGTTGAAACAAGGGAATCACATCAATACCTTCATTGTAGCTCACAAGAGGACTCTCCCAAGGGATACTTTCCATCAATTGGTTCACCTCCAACATGGACATCTTTATAGTTTCTCTGCTTGGGTTCGATTAAGTGAGGGAAATGCACCTGTGGCTGTTCTATTCAGAAATAGTAAAGGGGGTCAGATTCTACATGGTGGGGAAACCATGGCCAAACATGGGTGCTGGAGTTTGCTCAAAGGTGGCATTGTCTCTAATTTTACAGGCCAAGCTGAGGTTATTTTTGAGAGTACAAATACAGCAGTGGAAATCTGGGTTGATAATGTCTCACTACAGCCATTTACAAGGGAGCAATGGCGATCCCACCAAGACAAAAGCATTAACAAGGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACTCAAGCAGACAACAGGAAACTAGCAGGTGCAAAAGTCTTCATTGACCAGAAAAAACCAAACTTCCCATTTGGGGCAGGAATGAACTACCACATTCTCCTCAGCAAAGAATACCAACAGTGGTTTGCATCAAGATTTTCCTATGCCACTTTCACCAATGAACTTAAATGGTATAGCACTGAGAAAGTAAGAGGCCAAGAGAACTACACTATCCCTGACGCAATGCTTGAGTTTGCCCAACAACATGGTATTTCAGTAAGAGGACACAACGTTTTCTGGGACAATCCCAAATTCCAGCCACAATGGGTCAAGTCACTCTCCCCTGAAGATTTGAAGGAAGCAGCCGACAGAAGAATCAACTCCGTGGTTAAGAGATATTCTGGAAAGTTTATCCATTGGGATGTCGTGAACGAAAACGTGCACTTCAGATTCTTTGAGGACAAACTAGGTGAAAATGCCTCTGCAGAGTACTTCAACATAGCACATAAACTTGACAATAACACACTTCTTTTCATGAATGAATACAATACCATGGAACACGATTACGAAAAGACAGCAACCCCAGCTAACTTCAGAAAGAAACTCCTCGAAATCCTGTCGTATCCTGGGAACCAAAACATCCCAGCAGGAATCGGCTTGCAGGGCAATTTCGGCCCTGCTGCACCCAACCTGCCATACATGAGATCCGCTTTGGACCTTCTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTGTTCACGAAACTCCAGATCAGGCACAATACTATGAGGAAGTTCTACGAGAAGGATACTCACATCCTGCAGTGAAGGGGATAATCACATTTGCCGGCCCAGAATCAGCAGGTTTCACTACTCTACCGCTTGTGGATATGAATTTCAAGAACACCCCAGCAGGAGATGTTGTCAATAAGCTTTTGGCTGAATGGAAATCTCCCAGCTTTGAAATTACAGCCGATGATGAAGGTTTTGTTGATGCTTCGTTGTTCCATGGAGATTACAATGTCACAGTGCAACACCCTCGAACCAATTCCTCCATTTCTGTTAGCATTAGAGTGACTGAAGAGGCCGCTCATCGGACCTTGAATGTCCAACTCCGTGATAATTGA 1764 43.48 MNILKAFRLLLLPLILIFSGKSIITIQGFSYDYSATTKASCLAKPRRVYNGGGIIVNPEFNNGIEGWKVFGGGEIKQGWLKQGNHINTFIVAHKRTLPRDTFHQLVHLQHGHLYSFSAWVRLSEGNAPVAVLFRNSKGGQILHGGETMAKHGCWSLLKGGIVSNFTGQAEVIFESTNTAVEIWVDNVSLQPFTREQWRSHQDKSINKVRKSKVRLQITQADNRKLAGAKVFIDQKKPNFPFGAGMNYHILLSKEYQQWFASRFSYATFTNELKWYSTEKVRGQENYTIPDAMLEFAQQHGISVRGHNVFWDNPKFQPQWVKSLSPEDLKEAADRRINSVVKRYSGKFIHWDVVNENVHFRFFEDKLGENASAEYFNIAHKLDNNTLLFMNEYNTMEHDYEKTATPANFRKKLLEILSYPGNQNIPAGIGLQGNFGPAAPNLPYMRSALDLLGSTGYPIWITEVFVHETPDQAQYYEEVLREGYSHPAVKGIITFAGPESAGFTTLPLVDMNFKNTPAGDVVNKLLAEWKSPSFEITADDEGFVDASLFHGDYNVTVQHPRTNSSISVSIRVTEEAAHRTLNVQLRDN 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21474464 21480122 - CcPI632755_10g009920.1 Cco10g0992 189950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g0992 587 SUPERFAMILY (Trans)glycosidases 225 530 IPR017853 -
Cco10g0992 587 PANTHER GLYCOSYL HYDROLASE 31 573 IPR044846 GO:0004553(InterPro)|GO:0005975(InterPro)
Cco10g0992 587 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 226 524 IPR001000 GO:0004553(InterPro)|GO:0005975(InterPro)
Cco10g0992 587 SMART glyco_10 272 525 IPR001000 GO:0004553(InterPro)|GO:0005975(InterPro)
Cco10g0992 587 Gene3D Glycosidases 226 533 - -
Cco10g0992 587 Gene3D - 44 192 - -
Cco10g0992 587 Pfam Glycosyl hydrolase family 10 237 493 IPR001000 GO:0004553(InterPro)|GO:0005975(InterPro)
Cco10g0992 587 SUPERFAMILY Galactose-binding domain-like 52 190 IPR008979 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g0992 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1279 Cco-Chr2:24395824 Cco10g0992 Cco-Chr10:21474464 1.80E-100 dispersed
Cco10g0992 Cco-Chr10:21474464 Cco02g0753 Cco-Chr2:7854156 3.80E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60