Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1016 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAAAAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACAAAGATAACAGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACATTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTATGAGGGACGATAAAGTTGCACTGATGTCGTCGGTCAACAACAACTCAAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTTAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCACATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCCAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGCAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG 1092 42.67 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNKNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDKDNSSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGMRDDKVALMSSVNNNSRKRPQSSVDVEKMKRSLRARKSLKIASTSCNEEDHIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21824618 21826375 - CcPI632755_10g010160.1 Cco10g1016 189974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1016 363 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Cco10g1016 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983(InterPro)
Cco10g1016 363 MobiDBLite consensus disorder prediction 224 286 - -
Cco10g1016 363 CDD bHLH_AtIND_like 276 338 - -
Cco10g1016 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Cco10g1016 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 347 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco10g1016 363 MobiDBLite consensus disorder prediction 167 185 - -
Cco10g1016 363 MobiDBLite consensus disorder prediction 224 279 - -
Cco10g1016 363 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983(InterPro)
Cco10g1016 363 Gene3D - 277 333 IPR036638 GO:0046983(InterPro)
Cco10g1016 363 MobiDBLite consensus disorder prediction 163 210 - -
Cco10g1016 363 FunFam Basic helix-loop-helix transcription factor 276 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0877 Cco-Chr3:10562778 Cco10g1016 Cco-Chr10:21824618 2.10E-18 dispersed
Cco05g2315 Cco-Chr5:31736835 Cco10g1016 Cco-Chr10:21824618 1.60E-38 dispersed
Cco08g1827 Cco-Chr8:29297293 Cco10g1016 Cco-Chr10:21824618 1.70E-37 dispersed
Cco09g0037 Cco-Chr9:340734 Cco10g1016 Cco-Chr10:21824618 1.00E-12 dispersed
Cco10g1016 Cco-Chr10:21824618 Cco04g1449 Cco-Chr4:29903922 5.80E-10 dispersed
Cco10g1016 Cco-Chr10:21824618 Cco02g0747 Cco-Chr2:7773699 8.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60096 PF00010 HLH 7.70E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1016 - - - 0.0