Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1016 | ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAAAAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACAAAGATAACAGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACATTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTATGAGGGACGATAAAGTTGCACTGATGTCGTCGGTCAACAACAACTCAAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTTAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCACATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCCAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGCAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG | 1092 | 42.67 | MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNKNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDKDNSSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGMRDDKVALMSSVNNNSRKRPQSSVDVEKMKRSLRARKSLKIASTSCNEEDHIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 21824618 | 21826375 | - | CcPI632755_10g010160.1 | Cco10g1016 | 189974 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1016 | 363 | SMART | finulus | 281 | 330 | IPR011598 | GO:0046983(InterPro) | |
Cco10g1016 | 363 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 275 | 340 | IPR036638 | GO:0046983(InterPro) | |
Cco10g1016 | 363 | MobiDBLite | consensus disorder prediction | 224 | 286 | - | - | |
Cco10g1016 | 363 | CDD | bHLH_AtIND_like | 276 | 338 | - | - | |
Cco10g1016 | 363 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 275 | 324 | IPR011598 | GO:0046983(InterPro) | |
Cco10g1016 | 363 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 101 | 347 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cco10g1016 | 363 | MobiDBLite | consensus disorder prediction | 167 | 185 | - | - | |
Cco10g1016 | 363 | MobiDBLite | consensus disorder prediction | 224 | 279 | - | - | |
Cco10g1016 | 363 | Pfam | Helix-loop-helix DNA-binding domain | 285 | 325 | IPR011598 | GO:0046983(InterPro) | |
Cco10g1016 | 363 | Gene3D | - | 277 | 333 | IPR036638 | GO:0046983(InterPro) | |
Cco10g1016 | 363 | MobiDBLite | consensus disorder prediction | 163 | 210 | - | - | |
Cco10g1016 | 363 | FunFam | Basic helix-loop-helix transcription factor | 276 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0877 | Cco-Chr3:10562778 | Cco10g1016 | Cco-Chr10:21824618 | 2.10E-18 | dispersed | |
Cco05g2315 | Cco-Chr5:31736835 | Cco10g1016 | Cco-Chr10:21824618 | 1.60E-38 | dispersed | |
Cco08g1827 | Cco-Chr8:29297293 | Cco10g1016 | Cco-Chr10:21824618 | 1.70E-37 | dispersed | |
Cco09g0037 | Cco-Chr9:340734 | Cco10g1016 | Cco-Chr10:21824618 | 1.00E-12 | dispersed | |
Cco10g1016 | Cco-Chr10:21824618 | Cco04g1449 | Cco-Chr4:29903922 | 5.80E-10 | dispersed | |
Cco10g1016 | Cco-Chr10:21824618 | Cco02g0747 | Cco-Chr2:7773699 | 8.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60096 | PF00010 | HLH | 7.70E-09 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1016 | - | - | - | 0.0 |