Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1018 ATGAAGTTCATGAAACTTGGATCAAAATCTGATAGCTTTCAGAATGATGGGACCAATGTTAGGTATGTTGTAGGTGAATTAGCAACAGACATCACGGTTATCGTAGGGGATGTCAAGTTTTACCTCCATAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACAGCTGCCACTGGGGAGCACAATGATGAAATATACATTCCAGAGATCCCGGGTGGTTCTGCAGCATTTGAGATATGTGCCAAATTCTGTTACGGCATGACCGTTACTCTTAATGCCTATAACGTAGTTGCAGCCCGTTGTGCTGCTGAATACTTAGGAATGCATGAGACAGTTGAAAAGGGAAACCTCGCCTACAAAATCGACGTTTTCCTTAGTTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGTCCACAAAGGCGTTAATGCCATTATCTGAGGAACTGAAATTAGTAAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGCAAGAAACTACCTGAGGAAAATGGGAACAATCCCAACTGGAATGGCGTCAGGAATCGTAGTGTGCCGAAGGACTGGTGGGTTGAGGATCTTTGTGAGCTAGAAATTGATGTATATAAGCGTGTTATAACGAGTATAAAAAACAAAGGAATAGTCCCTAATGATGTGATTGGAGAAGCACTGAAAGCTTATGCTTACCGTTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGGGGATCCACTGAAGTATCAGTCGGCAGTGTCGACAATTGTCTGGCTGTTACCTGCTGAGAAAGGCAGTGTTTCCAGTAGTTTCTTGTCCAAATTGCTGAAAGCGTCCATTTTCCTAGCATCTGGAGATGAGACCAAAGAAGAGCTCGTTCAACGAATGGGACAGCAGCTAGAGGAGGCTACAGTGAGCGATCTTTTGCTGCGAGCACCGGAAGGTGAAGCTACGACTTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTGCAAGAACATAGTAGCGAAATCGAGTCACTTGAAGAGGGAAATGAGCTTCAGGAGCCAAGAGGGCCAGGGATTCTATCGGATGCTACTAAGTTGATGGTGGCAAAATTGATTGATGGTTACCTTGCTGAAGTTGCAAAAGATCCCAACCTTTCATCAGTAAAGTTCATTGATCTTGCAGAGATGGTATCTTGCATCGCTCGGCCTTCACATGACGGGCTCTATCGAGCCATAGACATGTATCTAAAGGAACATCCAGGGATTGGCAAGAGTGATAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAACTATCCGCTGATGCGTGCATTCATGCTGTACAAAATGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTGTTTTTTGAGCAAGTCAGGGCCTCAGCATCATCAGGCAGCAGCACTCCCGACCTACATAAAGGCATCAAGGATCTAGCAAGTGGGTCTCACAGCAGCTCAAGATCAGCCACGACGAATCCCGAGGAAGATTGGGATGCTGTTGCCATGGCTGAGGAGCTCAAGGCTCTCAAAGGGGAGCTAGCTTCCTTGAGGCTTGCTACTGGTAAAGGAAGTAATGAGAGGAATGGAGATAGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGATTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAGCAAAGGAGGAGGATATGGCGAAAACAGCGGCTCGGATTCATCGGAGAGCCTTGGTTCTGCAAATCAGGAGGAAGCTAAGTCAACACCTTCCAGGAACAGAAGGCATTCAGTTTCTTAG 1881 44.76 MKFMKLGSKSDSFQNDGTNVRYVVGELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAATGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETVEKGNLAYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVITSIKNKGIVPNDVIGEALKAYAYRYLPGFSKGVLQCGDPLKYQSAVSTIVWLLPAEKGSVSSSFLSKLLKASIFLASGDETKEELVQRMGQQLEEATVSDLLLRAPEGEATTYDVNAVQKMVEVFLLQEHSSEIESLEEGNELQEPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLSSVKFIDLAEMVSCIARPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLHKGIKDLASGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLATGKGSNERNGDSKNGIDKAALSKMKGLLKSKKLFTKLWSSKGGGYGENSGSDSSESLGSANQEEAKSTPSRNRRHSVS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21864758 21869201 + CcPI632755_10g010180.1 Cco10g1018 189976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1018 626 MobiDBLite consensus disorder prediction 508 522 - -
Cco10g1018 626 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515(InterPro)
Cco10g1018 626 SUPERFAMILY POZ domain 22 117 IPR011333 -
Cco10g1018 626 Gene3D Potassium Channel Kv1.1; Chain A 13 121 IPR011333 -
Cco10g1018 626 PANTHER OS12G0117600 PROTEIN 26 568 IPR043454 -
Cco10g1018 626 MobiDBLite consensus disorder prediction 492 524 - -
Cco10g1018 626 Pfam NPH3 family 210 464 IPR027356 -
Cco10g1018 626 MobiDBLite consensus disorder prediction 590 614 - -
Cco10g1018 626 Pfam BTB/POZ domain 28 118 IPR000210 GO:0005515(InterPro)
Cco10g1018 626 MobiDBLite consensus disorder prediction 589 626 - -
Cco10g1018 626 Coils Coil 528 548 - -
Cco10g1018 626 ProSiteProfiles NPH3 domain profile. 210 488 IPR027356 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1506 Cco-Chr4:30498105 Cco10g1018 Cco-Chr10:21864758 1.40E-222 dispersed
Cco05g2849 Cco-Chr5:36134852 Cco10g1018 Cco-Chr10:21864758 9.70E-122 dispersed
Cco08g1544 Cco-Chr8:27123941 Cco10g1018 Cco-Chr10:21864758 7.10E-150 dispersed
Cco10g1018 Cco-Chr10:21864758 Cco10g2012 Cco-Chr10:33625976 1.40E-88 dispersed
Cco10g1018 Cco-Chr10:21864758 Cco09g0595 Cco-Chr9:5280049 5.20E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79