Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1022 ATGCTTCCCAGGAAAGACAGTTCTCGTATAGACACTTCTGAGCTGAAAGCAATGATCTATCGAAAGCTTGGACATCAGAGGTCGGAGAAATACTTTGATCACCTCAAGAAATTGTTGAGTTTAAAGATTAACAAAAGGGAATTCGACAAGTTTTGCATTCAGATTATTGGGAGGGAGATTATACCTCTTCATAATCGGCTTATCAGAGCAATTCTTCAAAATGCATGTGTGGCTAAAACTCCCCCTGTTCTTAGCAGTACTAAGAAAATAGGAGGCAATCTCAGTGTAAAGGTTGTTAATGGGTATCAGAGGAGTTGTCTTCAATCGCTTCATGGGGATGCATTCCTTTCTTCTCCCCGAAAGGGTAGGTCTCCAGTTAGTAGAGACCGTAAGATTCGTGATCGTCCAAGTCCTTTGGGACCGTGTGGCAAGCCACAGAGTATGGCACTTGAAGAATTTGCTTTCAAGGCACAAGAACAGCAAAGTGCTACAGAGTTGCATTCTCTTGGCAGCCGACCTCCTGTCGAAATGGCGTCTGTAGAAGATGGAGAAGAGGTTGAGCAGGTGGCTGGAAGTCCAGGAGTCCAGAGCAGAAGCCCAGTTACTGCTCCGCTTGGTATATCCATGAACTTCATTGGTTCTGGTAAAACTCTCTCTAATGTTCCTATAGGAAGAAATTACCATGTAACAACATGTCAAGATGGTGGCGAGCTACCTGACACAAGGCTGCTAAGAACTCATTTGAGGCAGAAGTTGGAAACGGAGCAGATTGATATATCTGTAGATGGTGTAAACCTTCTTAACAATGCACTGGATGTTTATTTAAAGAGGTTAATCGAGCCATGTTTGAATTTCTCTCGATCAAGGTGCGAACGACCGAAATTTATAGGCAATCAACCGATAACTGGCTCAAGAATTGCATTCCAGGAACAACATCGACAACAATTGAATAATGCATCCTTGTTGGACTTCCGTGTCGCAATGCAACTGAATCCTGAAGTACTGGGGAGAGACTGGACGATGCAGCTTGAGAAAATTAGTTTACGAGCTTCTGAAGAGCGAACACTGGCCAAGCTGGTATGA 1083 43.67 MLPRKDSSRIDTSELKAMIYRKLGHQRSEKYFDHLKKLLSLKINKREFDKFCIQIIGREIIPLHNRLIRAILQNACVAKTPPVLSSTKKIGGNLSVKVVNGYQRSCLQSLHGDAFLSSPRKGRSPVSRDRKIRDRPSPLGPCGKPQSMALEEFAFKAQEQQSATELHSLGSRPPVEMASVEDGEEVEQVAGSPGVQSRSPVTAPLGISMNFIGSGKTLSNVPIGRNYHVTTCQDGGELPDTRLLRTHLRQKLETEQIDISVDGVNLLNNALDVYLKRLIEPCLNFSRSRCERPKFIGNQPITGSRIAFQEQHRQQLNNASLLDFRVAMQLNPEVLGRDWTMQLEKISLRASEERTLAKLV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21912770 21913852 + CcPI632755_10g010220.1 Cco10g1022 189980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1022 360 MobiDBLite consensus disorder prediction 123 137 - -
Cco10g1022 360 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 6 284 IPR024738 GO:0070461(InterPro)
Cco10g1022 360 MobiDBLite consensus disorder prediction 117 143 - -
Cco10g1022 360 PANTHER TRANSCRIPTIONAL ADAPTER 1 5 351 IPR024738 GO:0000124(PANTHER)|GO:0003713(PANTHER)|GO:0006357(PANTHER)|GO:0070461(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1022 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1990 Cco-Chr5:29006673 Cco10g1022 Cco-Chr10:21912770 5.10E-50 dispersed
Cco05g1995 Cco-Chr5:29076706 Cco10g1022 Cco-Chr10:21912770 1.90E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g685 . Blo03g00078 Bda06g01207 . Bpe07g00270 . . . . . . . . . . . . . . . . . . . Cla10g01004 Cam10g1027 Cec10g1058 Cco10g1022 Clacu10g1044 Cmu10g1828 Cre10g1201 . . . Cone10ag1038 . . . . . . . . . . . . Sed07g1270 . Cmo16g00347 . . . . Cpe14g00272 Cpe01g00409 Bhi11g01148 Tan01g0647 Cmetu07g2285 . Hepe07g0424 Mch10g0454 . . . . . . . . Lsi03g01032 . . Cme07g02172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007125 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 2 37