Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1041 ATGGCTAATCGGAGCTCCGAACAAGTATCCGATGCCATTCCCGACATGTCGTCATCCGACACAATCGTAAAAGAAGAAGAAGAAGAAGAAGTTGTTGCACTGTCGGTGTCGGAGAGGAAACTGTCATGGCAAAAGCTCCGACGATTCGACTCGTTGGATTTAGAGTCACGTAAACTCCATGGTCATGATGATCATCATCATTCCTATGCCAAGGAGAAGAAATGGAGTGTAATCTTACACTTAGCATTCCAAAGCATCGGCATAGTTTACGGCGACATCGGAACGTCGCCGTTGTACGTGTTCTCGAGCACGTTTCCAGATGGAATAAAGCACAACGACGATATTTTAGGGGCGTTGTCGTTGATCGTTTACACCATAACTTTGATTCCTGTAATCAAGTATGTGTTTATTGTTTTGAGAGCAAACGACAACGGAGAAGGGGGAACCTTCGCATTGTACTCATTGATATGTCGATATGCAAAAGTGGGATTGATTCCGAATGCAGAGATTGAGGATCGAGAAGTGTCGAATTATCAATTAAGTTTGCCAAATGGAAGAGAGAAGAGAGCTTCAAGGATTCAATCAAAGCTAGAGAAAAGCCATTTTGCAAAGGTGTTTCTTCTATTTGCAACTATGCTTGGGACTTCCATGGTCATTGGAGATGGTGTTCTCACTCCTTGTATCTCAGTGTTATCTGCTGTGGGAGGGATCAAGGAGGCTACCCCTGCAATGACAGAAGGTAAGATTGTCTGGGCATCAGTAGGCATATTGGTGTGCCTATTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTACACTTTTGCTCCAATTATCCTCATTTGGTTTGCTTTCAATGCTGGAATTGGTATCTACAACTTCATAAAATATGACCCAACTGTCATTAAAGCCTTAAATCCAAACTACATTTTTCAATACTTCCAAAGGAACAAAAAGGATGCTTGGATTTCTCTTGGTGGCATTGTTCTTGCCATTACAGGGACCGAAGCCTTGTTCGCCGATGTCGGGCATTTCAGCGTCCAATCGATCCAGCTAAGCATGTCAGCAGTGACCTACCCAGCTCTAATATTTGCTTACATAGGCCAAGCTTCGTTTCTTCGCAAGCATGATGATCTAGTTTCGGACACATTCTACAAGTCAATTCCTGGAAGTTTGTATTGGCCAGTGTTTGTTGTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCAATGATTTCAGGAACATTCTCAATAATTCAACAATCACTTTCACTTGGATGCTTCCCAAGAGTTAAAGTGGTTCATACATCAGCTAAGTATGAAGGGCAAGTTTATGTTCCTGAGATAAATTACCTTTTGATGTTGGCTTGTATTGGTGTTACTTTGGGGTTCAAGAACACTACAAAGATTGGGAATGCATATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCTTTCTTAGTACTCATTATGGTTATGATATGGAAAACTCATATCCTTTTCATAATCACTTACATTCTCATCATTGGTAGTGTGGAATTGGTGTATCTGAGTTCAGTCCTTTACAAGTTTGACCAAGGAGGCTATCTTCCTTTGGCTTTTGCAGCTGCTTTGATGACAATCATGTATGTGTGGAATAGTGTGTTTAGAAAGAAGTACTTTTATGAGCTCAATAACAAAATCTCTTCAGAAAAGCTCAATGAGATGGTGAATGCCACGAACTTTAGAAGAATTCCAGGCATTGCATTCTTCTACTCTGAGCTTGTTCAAGGCATCCCTCCCATCTTCAAGCATTACGTCGACCACATTCCTGCACTGCATTCTGTGCTCGTCTTCATCACCATTAAATCGCTTCCTGTGAGCAAGGTTCCAGCAGATGAACGTTTCCTCTTCCGACAAGTAGAGGCGAAGGAGATCGATGTGTTTCGTTGTGTTGTTCGATATGGGTACACGGATGTGCAGACAGAACAAGAATCGTTTGAGAAGATATTGATTGAAAGATTGGAAGAGTTCGAGAGAGAGCGACGTAGATTGGTTAAAGGGGCAAATAAAGTTGAAAATGAGGATGAGGATGAGAAAGGATTCGGAGGAATTGGAGAAGCATGGAAGGATGGAGTTGTTCATTTAGTTGGGGAAAGTGAAGTGGTTGCTAAAAAAGGGGCAAGCTTTGGGAAGAGAATGATGATAAACTATGCATACAGCTTCTTGAAGGGGAATTTGAGGCAAACTGATCAAGTATTTGATATTCCTCGCAAGCATATGCTCAAAGTAGGAATGACTTGTGAACTTTAG 2298 41.69 MANRSSEQVSDAIPDMSSSDTIVKEEEEEEVVALSVSERKLSWQKLRRFDSLDLESRKLHGHDDHHHSYAKEKKWSVILHLAFQSIGIVYGDIGTSPLYVFSSTFPDGIKHNDDILGALSLIVYTITLIPVIKYVFIVLRANDNGEGGTFALYSLICRYAKVGLIPNAEIEDREVSNYQLSLPNGREKRASRIQSKLEKSHFAKVFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEATPAMTEGKIVWASVGILVCLFMVQRFGTDKVGYTFAPIILIWFAFNAGIGIYNFIKYDPTVIKALNPNYIFQYFQRNKKDAWISLGGIVLAITGTEALFADVGHFSVQSIQLSMSAVTYPALIFAYIGQASFLRKHDDLVSDTFYKSIPGSLYWPVFVVAVSASIIASQAMISGTFSIIQQSLSLGCFPRVKVVHTSAKYEGQVYVPEINYLLMLACIGVTLGFKNTTKIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHILFIITYILIIGSVELVYLSSVLYKFDQGGYLPLAFAAALMTIMYVWNSVFRKKYFYELNNKISSEKLNEMVNATNFRRIPGIAFFYSELVQGIPPIFKHYVDHIPALHSVLVFITIKSLPVSKVPADERFLFRQVEAKEIDVFRCVVRYGYTDVQTEQESFEKILIERLEEFERERRRLVKGANKVENEDEDEKGFGGIGEAWKDGVVHLVGESEVVAKKGASFGKRMMINYAYSFLKGNLRQTDQVFDIPRKHMLKVGMTCEL 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22463363 22469246 - CcPI632755_10g010410.1 Cco10g1041 189999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1041 765 NCBIfam potassium uptake protein 81 764 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco10g1041 765 MobiDBLite consensus disorder prediction 1 17 - -
Cco10g1041 765 Coils Coil 670 690 - -
Cco10g1041 765 Pfam K+ potassium transporter integral membrane domain 81 568 IPR053951 -
Cco10g1041 765 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 63 764 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco10g1041 765 MobiDBLite consensus disorder prediction 1 25 - -
Cco10g1041 765 Pfam K+ potassium transporter C-terminal domain 581 765 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0585 Cco-Chr9:5144988 Cco10g1041 Cco-Chr10:22463363 1.90E-302 dispersed
Cco10g1041 Cco-Chr10:22463363 Cco10g1428 Cco-Chr10:27365148 1.00E-165 dispersed
Cco07g1286 Cco-Chr7:26942717 Cco10g1041 Cco-Chr10:22463363 7.70E-225 transposed
Cco10g0891 Cco-Chr10:18613100 Cco10g1041 Cco-Chr10:22463363 3.00E-161 transposed
Cco11g0046 Cco-Chr11:522500 Cco10g1041 Cco-Chr10:22463363 2.30E-190 transposed
Cco10g1041 Cco-Chr10:22463363 Cco09g0584 Cco-Chr9:5126557 1.20E-288 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1041 K03549 - csv:101215797 1283.09