Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1138 | ATGCAGCATGTGACCCCAATGCCTGTATCCCGCGACAAGCATGCATTGAATTTTAAGAACATTAGTCGTCGGGCAGAGGTCCATGATCCCTCTCCCACTTCCCAACTCCTGTTTTTGCCACACAGATCTGACGCGTCGGTGATGTCGGTGCCTGCGGCTTCCGTCACCGCAGGTATATTGGAACAGGTCTCTTACCAGTTTCCAAAACAGTTGATTTTATTGTGGTTTGTGATTTCCGTAACCAATGCCGATGTCCCCGACGTACCACCAGCACCTTTGGTTGCACCTACTACTCGCAATATGCCTCTACCTGCAAAATTGCCTCTTCACCAACACCATCACCGAAAATATATGTCACCACAAAGTGCGCCAGAAGCTGGACTAGCGCCGTCATCTCCTCCTTACTATGGGCATCTTATCACTTCTGGTCACCCACCCACAAGTTCAAATTTTTCCAAACCACTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGCTTACCTCAGCCACCACTTTCCCCTATTGCAGCAGCAGACTGTTGCAAACCTGACATGGTGTTAAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTATCCCATAAAAATTGATCTCCTCCTCTTGAACGTATCACAGAATCCTAACTGGAAACTCTTTCTCGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCGAGATTAAATATCTCAATGGACATTACTCCCCACGCTGGGATCAGCTTTTCTGCAGTCGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAAGTTCGTCTGGACCCTACACTGGTTGGCGATTACCATCTTCTCAATATTACCTGGTTTAAGCCTCCACCTCCTTCTGAAGCTCCTCTAGCTTCTGCATCACCTGTAGCAGCTCCAGCATACCATTTTCCAGCCTCAACATCACTGAGTTCTCCTAGTAAAGGACACCATTCTAATCTGACACTTATTCTTGGTATTGGCGCTGGTTTTTTGTTCGTTGCCATTCTTTTTGTGTTGATAATTTGCTTATGCACATCTCATCGTGGGAAGACTGAAGCACCTCCATTAGTAACTGAAAAACGAAGGGTTGAGGACAAAGTGCCTGTGGCAGGAGCAGGATCTTTCCCTCATCCATCAAGTATGAGATTTCTAACTTATGAAGAGCTTAAAGAAGCAACTAATAACTTTGAAGCAGCCAGCATATTGGGGGAGGGCGGTTTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGCGACAAGGAGTTTTTGGTTGAGGTCGAGATGCTTAGCCGGTTACATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGCGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTTTGGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCTGCCCGAGGGCTTGCTTACCTTCACGAAGACTCACAACCTTGTGTGATACACAGAGACTTTAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAAGTTGCCGACTTCGGTCTTGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGATACGTGGCCCCTGAGTATGCAATGACGGGCCATCTACTTGTTAAAAGTGATGTTTATAGCTACGGAGTTGTACTTCTTGAGTTGCTCACCGGAAGGAAACCTGTAGATATGTCACAACCATCGGGACAAGAGAACCTGGTCACATGGGCGAGGCCGATTTTGAGAGACAAGGACCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAGTATCCGAAGGAAGATTTTGTGCGGGTGTGTACCATTGCTGCAGCCTGCGTCGCTCCTGAGGCTGGCCAACGTCCAACTATGGGCGAAGTTGTACAGTCTCTTAAAATGGTACAGCGCGTTACAGAATACCAAGACTCCATGGTACCATCGTCCAACAACCGAACCAATCTAAGACAGTCGTCCACAACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTTCATGAGGGACGATGA | 2322 | 46.34 | MQHVTPMPVSRDKHALNFKNISRRAEVHDPSPTSQLLFLPHRSDASVMSVPAASVTAGILEQVSYQFPKQLILLWFVISVTNADVPDVPPAPLVAPTTRNMPLPAKLPLHQHHHRKYMSPQSAPEAGLAPSSPPYYGHLITSGHPPTSSNFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPIAAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVRLDPTLVGDYHLLNITWFKPPPPSEAPLASASPVAAPAYHFPASTSLSSPSKGHHSNLTLILGIGAGFLFVAILFVLIICLCTSHRGKTEAPPLVTEKRRVEDKVPVAGAGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR | 773 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 23800740 | 23806597 | - | CcPI632755_10g011380.1 | Cco10g1138 | 190096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1138 | 773 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 553 | 565 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1138 | 773 | SUPERFAMILY | Protein kinase-like (PK-like) | 408 | 706 | IPR011009 | - | |
Cco10g1138 | 773 | Pfam | Protein tyrosine and serine/threonine kinase | 432 | 704 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1138 | 773 | ProSitePatterns | Protein kinases ATP-binding region signature. | 435 | 457 | IPR017441 | GO:0005524(InterPro) | |
Cco10g1138 | 773 | Gene3D | Phosphorylase Kinase; domain 1 | 410 | 506 | - | - | |
Cco10g1138 | 773 | MobiDBLite | consensus disorder prediction | 147 | 168 | - | - | |
Cco10g1138 | 773 | Gene3D | Transferase(Phosphotransferase) domain 1 | 507 | 729 | - | - | |
Cco10g1138 | 773 | PANTHER | OS01G0750732 PROTEIN | 196 | 746 | IPR050885 | - | |
Cco10g1138 | 773 | CDD | STKc_IRAK | 435 | 705 | - | - | |
Cco10g1138 | 773 | ProSiteProfiles | Protein kinase domain profile. | 429 | 707 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1138 | 773 | MobiDBLite | consensus disorder prediction | 714 | 755 | - | - | |
Cco10g1138 | 773 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 507 | 724 | - | - | |
Cco10g1138 | 773 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 409 | 506 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g0266 | Cco-Chr7:2710180 | Cco10g1138 | Cco-Chr10:23800740 | 3.70E-87 | dispersed | |
Cco08g1529 | Cco-Chr8:26947146 | Cco10g1138 | Cco-Chr10:23800740 | 5.00E-72 | dispersed | |
Cco09g0061 | Cco-Chr9:532185 | Cco10g1138 | Cco-Chr10:23800740 | 3.40E-104 | dispersed | |
Cco10g1138 | Cco-Chr10:23800740 | Cco10g2058 | Cco-Chr10:33962794 | 4.70E-86 | dispersed | |
Cco10g1749 | Cco-Chr10:31042897 | Cco10g1138 | Cco-Chr10:23800740 | 3.00E-70 | dispersed | |
Cco11g1892 | Cco-Chr11:31631667 | Cco10g1138 | Cco-Chr10:23800740 | 2.60E-66 | dispersed | |
Cco10g1138 | Cco-Chr10:23800740 | Cco02g0224 | Cco-Chr2:2104780 | 7.70E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87150 | PF00069 | Pkinase | 7.00E-44 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1138 | - | - | - | 0.0 |