Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1138 ATGCAGCATGTGACCCCAATGCCTGTATCCCGCGACAAGCATGCATTGAATTTTAAGAACATTAGTCGTCGGGCAGAGGTCCATGATCCCTCTCCCACTTCCCAACTCCTGTTTTTGCCACACAGATCTGACGCGTCGGTGATGTCGGTGCCTGCGGCTTCCGTCACCGCAGGTATATTGGAACAGGTCTCTTACCAGTTTCCAAAACAGTTGATTTTATTGTGGTTTGTGATTTCCGTAACCAATGCCGATGTCCCCGACGTACCACCAGCACCTTTGGTTGCACCTACTACTCGCAATATGCCTCTACCTGCAAAATTGCCTCTTCACCAACACCATCACCGAAAATATATGTCACCACAAAGTGCGCCAGAAGCTGGACTAGCGCCGTCATCTCCTCCTTACTATGGGCATCTTATCACTTCTGGTCACCCACCCACAAGTTCAAATTTTTCCAAACCACTGATGAAGAGTGGATCAGCTCCTCCTGATGGTAGGCTTGAAAACATTGCTCCCATACAGTCCAGTGCTGGTGCTATTCCCTCTGGCTTACCTCAGCCACCACTTTCCCCTATTGCAGCAGCAGACTGTTGCAAACCTGACATGGTGTTAAAACGAGGAAGTGGTGATGACTGCCATTGTGTCTATCCCATAAAAATTGATCTCCTCCTCTTGAACGTATCACAGAATCCTAACTGGAAACTCTTTCTCGAAGAGTTAGCTTCTGAACTTGGTTTACGAGTCTCTCAGATTGAGCTGATAAACTTTTATGTACTTAGTTTATCGAGATTAAATATCTCAATGGACATTACTCCCCACGCTGGGATCAGCTTTTCTGCAGTCGATGCATCTGCAATAAACTCTTCACTTACAATGCATAAAGTTCGTCTGGACCCTACACTGGTTGGCGATTACCATCTTCTCAATATTACCTGGTTTAAGCCTCCACCTCCTTCTGAAGCTCCTCTAGCTTCTGCATCACCTGTAGCAGCTCCAGCATACCATTTTCCAGCCTCAACATCACTGAGTTCTCCTAGTAAAGGACACCATTCTAATCTGACACTTATTCTTGGTATTGGCGCTGGTTTTTTGTTCGTTGCCATTCTTTTTGTGTTGATAATTTGCTTATGCACATCTCATCGTGGGAAGACTGAAGCACCTCCATTAGTAACTGAAAAACGAAGGGTTGAGGACAAAGTGCCTGTGGCAGGAGCAGGATCTTTCCCTCATCCATCAAGTATGAGATTTCTAACTTATGAAGAGCTTAAAGAAGCAACTAATAACTTTGAAGCAGCCAGCATATTGGGGGAGGGCGGTTTTGGCAGGGTTTTTAAGGGTGTCTTAAGTGACGGCACAGCTGTTGCAATCAAGAGGCTTACAAGTGGAGGGCAACAAGGCGACAAGGAGTTTTTGGTTGAGGTCGAGATGCTTAGCCGGTTACATCATCGAAATCTTGTTAAACTTGTTGGCTACTACAGTAATCGCGACTCTTCACAAAACCTGCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTTTGGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTGGATGCTGCCCGAGGGCTTGCTTACCTTCACGAAGACTCACAACCTTGTGTGATACACAGAGACTTTAAGGCGTCAAATATATTGCTTGAGAACAACTTCCATGCCAAAGTTGCCGACTTCGGTCTTGCTAAACAAGCTCCGGAAGGCAGAGCTAATTACCTTTCTACTCGTGTGATGGGCACATTTGGATACGTGGCCCCTGAGTATGCAATGACGGGCCATCTACTTGTTAAAAGTGATGTTTATAGCTACGGAGTTGTACTTCTTGAGTTGCTCACCGGAAGGAAACCTGTAGATATGTCACAACCATCGGGACAAGAGAACCTGGTCACATGGGCGAGGCCGATTTTGAGAGACAAGGACCGGTTGGAAGAACTTGCTGATCCACGACTTGGAGGAAAGTATCCGAAGGAAGATTTTGTGCGGGTGTGTACCATTGCTGCAGCCTGCGTCGCTCCTGAGGCTGGCCAACGTCCAACTATGGGCGAAGTTGTACAGTCTCTTAAAATGGTACAGCGCGTTACAGAATACCAAGACTCCATGGTACCATCGTCCAACAACCGAACCAATCTAAGACAGTCGTCCACAACTTTCGAGTCTGATGGATCCTCTTCAATGTTCTCTTCTGGTCCTTATTCTGGTTTAAGTGCTTTTGACAATGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTTCATGAGGGACGATGA 2322 46.34 MQHVTPMPVSRDKHALNFKNISRRAEVHDPSPTSQLLFLPHRSDASVMSVPAASVTAGILEQVSYQFPKQLILLWFVISVTNADVPDVPPAPLVAPTTRNMPLPAKLPLHQHHHRKYMSPQSAPEAGLAPSSPPYYGHLITSGHPPTSSNFSKPLMKSGSAPPDGRLENIAPIQSSAGAIPSGLPQPPLSPIAAADCCKPDMVLKRGSGDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELGLRVSQIELINFYVLSLSRLNISMDITPHAGISFSAVDASAINSSLTMHKVRLDPTLVGDYHLLNITWFKPPPPSEAPLASASPVAAPAYHFPASTSLSSPSKGHHSNLTLILGIGAGFLFVAILFVLIICLCTSHRGKTEAPPLVTEKRRVEDKVPVAGAGSFPHPSSMRFLTYEELKEATNNFEAASILGEGGFGRVFKGVLSDGTAVAIKRLTSGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYYSNRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPRLGGKYPKEDFVRVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSMVPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSAFDNDNVSRTAIFSEDLHEGR 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23800740 23806597 - CcPI632755_10g011380.1 Cco10g1138 190096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1138 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1138 773 SUPERFAMILY Protein kinase-like (PK-like) 408 706 IPR011009 -
Cco10g1138 773 Pfam Protein tyrosine and serine/threonine kinase 432 704 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1138 773 ProSitePatterns Protein kinases ATP-binding region signature. 435 457 IPR017441 GO:0005524(InterPro)
Cco10g1138 773 Gene3D Phosphorylase Kinase; domain 1 410 506 - -
Cco10g1138 773 MobiDBLite consensus disorder prediction 147 168 - -
Cco10g1138 773 Gene3D Transferase(Phosphotransferase) domain 1 507 729 - -
Cco10g1138 773 PANTHER OS01G0750732 PROTEIN 196 746 IPR050885 -
Cco10g1138 773 CDD STKc_IRAK 435 705 - -
Cco10g1138 773 ProSiteProfiles Protein kinase domain profile. 429 707 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1138 773 MobiDBLite consensus disorder prediction 714 755 - -
Cco10g1138 773 FunFam Receptor-like serine/threonine-protein kinase ALE2 507 724 - -
Cco10g1138 773 FunFam Receptor-like serine/threonine-protein kinase ALE2 409 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0266 Cco-Chr7:2710180 Cco10g1138 Cco-Chr10:23800740 3.70E-87 dispersed
Cco08g1529 Cco-Chr8:26947146 Cco10g1138 Cco-Chr10:23800740 5.00E-72 dispersed
Cco09g0061 Cco-Chr9:532185 Cco10g1138 Cco-Chr10:23800740 3.40E-104 dispersed
Cco10g1138 Cco-Chr10:23800740 Cco10g2058 Cco-Chr10:33962794 4.70E-86 dispersed
Cco10g1749 Cco-Chr10:31042897 Cco10g1138 Cco-Chr10:23800740 3.00E-70 dispersed
Cco11g1892 Cco-Chr11:31631667 Cco10g1138 Cco-Chr10:23800740 2.60E-66 dispersed
Cco10g1138 Cco-Chr10:23800740 Cco02g0224 Cco-Chr2:2104780 7.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87150 PF00069 Pkinase 7.00E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1138 - - - 0.0