Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1160 ATGGAGGAAACTTTTGTTCCTCTTCGTGGAATTAAGAATGACCTGAAAGGGAGATTAGTGTGTTACAAACAAGACTGGACTGGTGGTTTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGAGTGTTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATCATTCACTCCATTGTTGGAGGTCAACCTTTGCTCATCTTGGGTGTTGCGGAGCCTACGGTTATTATGTACACCTTCATGTTTAATTTTGCTAAGGAACGTCCCGAGTTGGGCCGGAATTTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATATTAGGTGCTTGTTCCATCATCAATAGGTTCACACGTCTGGCTGGTGAACTGTTCGGTTTGCTTATCGCGATGCTTTTCATGCAGCAAGCGATCAAAGGACTTGTGGATGAGTTTCGCATCCCAGAACGGGAAAATCCAAAATTGCTCCAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTTTGGTACTATCATTTGGCCTTCTACTCACTGCTTTAAGGAGCCGAAAAGCCCGGTCATGGCGATATGGATCAGGTTCGCTCAGAAGCTTGATAGCAGACTATGGAGTACCGCTCATGGTTCTTGTTTGGACAGGTATTTCTTATATACCTTCAAAGAGTGTCCCACAAGGAATCCCAAGGCGACTCTTCAGCCCCAATCCATGGTCTCCCGGTGCGTATGAAAATTGGACTGTTATTAAGGATATGCTTGACGTTCCAGTTTTCTATATCTGTGGAGCTTTCATCCCCGCTACGATGATTGCGGTGCTTTACTATTTTGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAGCCATCTTCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATCCCTCCATCCAACGGAGTCATCCCACAATCTCCAATGCATACAAAGAGCCTGGCTACTCTCAAACACCAGTTGCTGAGGAATAAACTCGTAGAGACAGCACGAAGTAGTATGAGAAAGAATGCTAGCTTAGGACAGTTGTATGGAAGTATGCAACAAGCATATCAACAAATGCAGACCCCCTTGATCTACCAACAGCCTTCAATTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGCAGCTTCGATGCTCCGGTCGACGAGACAATATTTGATATCGAAAAGGAAATTGATGATTTATTGCCTGTTGAGGTGAAAGAACAACGGGTCAGTAATTTGCTTCAAGCTATAATGGTGGGAGGATGCGTTGCAGCCATGCCAGTCCTGAAAAAGATCCCAACCTCAGTTCTATGGGGTTACTTCGCTTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTCTTTACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCATGCGACTTTCGTCGAAACCGTGCCATTCAAATCCATTGTACTTTTTACCATTTTTCAAACAGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCGATTGCCGGGGTGATGTTTCCTCTGATGATCATGCTCCTCGTCCCTGTAAGACAATACCTTCTTCCCAAGTTTTTCAAAGGGGCACATCTCCAAGACCTTGATGCTGCCGAATATGAAGAAGCACCAGCTTTACCGTTCAATCTTGCAACAGAAGCCGAGCTGGGCGCTGGAGCATCTTTTGGTGGGGATGGAGAGATTTTAGATGAGGTTATCACCCGAAGCCGCGGTGAGTTTAGGCGTATTAGCAGTCCTAAAATCACAAGCTCCACAGCAACACCAATATCTGACCGAAAAAGTATAGACAGCCCTCATCGCTCTTTCAGCCCTCGGTTGAGCGAGCTAAGAGGAGAGCACAGTCCTCGAGCCGGTGGACGAGGGACACCAGGTCAGAGGAGTGCAGAAGCTAAACCATCCAGTCTGGGAAAGAGCCCTCTTAATAACACAGCATCAAAGTAA 2154 45.17 MEETFVPLRGIKNDLKGRLVCYKQDWTGGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVDEFRIPERENPKLLQFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGSLRSLIADYGVPLMVLVWTGISYIPSKSVPQGIPRRLFSPNPWSPGAYENWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVETARSSMRKNASLGQLYGSMQQAYQQMQTPLIYQQPSIRGLNELKETTIQAASSMGSFDAPVDETIFDIEKEIDDLLPVEVKEQRVSNLLQAIMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIVLFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEVITRSRGEFRRISSPKITSSTATPISDRKSIDSPHRSFSPRLSELRGEHSPRAGGRGTPGQRSAEAKPSSLGKSPLNNTASK 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24152850 24156452 + CcPI632755_10g011600.1 Cco10g1160 190118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1160 717 MobiDBLite consensus disorder prediction 664 686 - -
Cco10g1160 717 MobiDBLite consensus disorder prediction 648 717 - -
Cco10g1160 717 MobiDBLite consensus disorder prediction 648 663 - -
Cco10g1160 717 PANTHER ANION EXCHANGE PROTEIN 5 639 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Cco10g1160 717 Pfam HCO3- transporter integral membrane domain 8 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco10g1160 717 Pfam HCO3- transporter integral membrane domain 202 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco10g1160 717 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cco10g1160 717 Gene3D Helical hairpin bin 18 60 - -
Cco10g1160 717 MobiDBLite consensus disorder prediction 698 717 - -
Cco10g1160 717 FunFam probable boron transporter 2 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1462 Cco-Chr1:26439814 Cco10g1160 Cco-Chr10:24152850 0.00E+00 dispersed
Cco08g1470 Cco-Chr8:26547740 Cco10g1160 Cco-Chr10:24152850 7.10E-214 dispersed
Cco10g1160 Cco-Chr10:24152850 Cco07g1363 Cco-Chr7:27693852 9.10E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1160 K24194 - csv:101205388 1394.79