Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1167 ATGGCAGCCATGGCTCTTTCATCTACATTCACAGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTCTCATCCTCGGTTCGCAGCAATGGTAGAGTCTCAATGAGACGATCTGGAAAGCCAGCGGCTTCCTCAGGCAGCCCATGGTATGGTCCGGACCGTGTGAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGGGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCTGCCGATCCTGAGACCTTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGTGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATTCATGCACAGAGTATTTTGGCCATTTGGGCATCTCAAGTAGTGCTAATGGGTGCAGTTGAAGGTTACCGTATTGCCGGAGGACCACTCGGAGAAGTTACCGATCCCATCTACCCAGGCAGTAGCTTTGATCCCCTCGGACTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTCATACAAGCCATTGTAACAGGAAAGGGTCCCTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 49.62 MAAMALSSTFTGKAVPLNAPTELSSSVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGSSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24263188 24263985 - CcPI632755_10g011670.1 Cco10g1167 190125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1167 265 MobiDBLite consensus disorder prediction 21 47 - -
Cco10g1167 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cco10g1167 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cco10g1167 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco10g1167 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cco10g1167 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2219 Cco-Chr4:35801754 Cco10g1167 Cco-Chr10:24263188 8.40E-136 dispersed
Cco06g1814 Cco-Chr6:28499730 Cco10g1167 Cco-Chr10:24263188 1.40E-26 dispersed
Cco08g0264 Cco-Chr8:4743934 Cco10g1167 Cco-Chr10:24263188 2.80E-55 dispersed
Cco10g0603 Cco-Chr10:8051347 Cco10g1167 Cco-Chr10:24263188 4.30E-95 dispersed
Cco10g1167 Cco-Chr10:24263188 Cco11g1967 Cco-Chr11:32142907 1.30E-40 dispersed
Cco10g1167 Cco-Chr10:24263188 Cco04g2218 Cco-Chr4:35799355 1.90E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1167 K08912 - csv:101203342 528.094