Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1169 | ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTCCTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCCGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGACGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGCAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAACAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGACGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGACTCTGCATGAACCCCAGAATTTGCTGAACAACGGGGCATTGATGGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAAGTATCTTTGAGATCTTCTAAACCACATGACACGATACCTATATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCGAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGCTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCGTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGTACCAAATGATTTTCCCCACGTTTTGCGAGCTCAGGTCCTCGATTGGTTATCACATAGTCCTACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTCACAATATACCTACGGCAGACTGAAGCTTCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATTGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTCAGAAACAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGACCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAAGAAGCTTCAGATGGGTCAACAGAAAGTGGTGAAGATGACAGCCGATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAAAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGTTGTTTCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACTCGTCCTTGAATCTCGCATTGATGGAGATGGGTTTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTCGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCCATTGATGGAGGGGCAGATAGCTTTCTGTTTAGACCCAATGCCATAGGCCCGGCTGGTCTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTTTAGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGATATTCCTAGTTCTCTCTCGGATAGTAGCTGGAATCAAAAGCCAAACACCGATTTGGCCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACACCATCTAGCGCGTCTCTGGTTTACAGACCTGCAATGCTCTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGCGTGGCTCTCCTATTTAAAAGCTCACCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTATGGTACTAGTTAG | 3030 | 44.92 | MEAGYGGEACQLYGMGPMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGTDLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGTLHEPQNLLNNGALMGKSDLVSTFLSNGPQVSLRSSKPHDTIPISETPVQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKVPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAMFSVKGINLTQPTTRLLCAIEGKYLTQEASDGSTESGEDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAKLEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDAGGHSSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASIDGGADSFLFRPNAIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDSSWNQKPNTDLASSRFEIGRTELKPSQQHCKLCVRKPLGCGTPSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS | 1009 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 24282185 | 24288963 | - | CcPI632755_10g011690.1 | Cco10g1169 | 190127 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1169 | 1009 | Gene3D | - | 751 | 905 | IPR036770 | - | |
Cco10g1169 | 1009 | SUPERFAMILY | Ankyrin repeat | 778 | 891 | IPR036770 | - | |
Cco10g1169 | 1009 | MobiDBLite | consensus disorder prediction | 327 | 374 | - | - | |
Cco10g1169 | 1009 | MobiDBLite | consensus disorder prediction | 357 | 374 | - | - | |
Cco10g1169 | 1009 | MobiDBLite | consensus disorder prediction | 220 | 243 | - | - | |
Cco10g1169 | 1009 | Pfam | SBP domain | 156 | 229 | IPR004333 | GO:0003677(InterPro) | |
Cco10g1169 | 1009 | ProSiteProfiles | Zinc finger SBP-type profile. | 153 | 230 | IPR004333 | GO:0003677(InterPro) | |
Cco10g1169 | 1009 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 34 | 1007 | IPR044817 | GO:0003677(InterPro) | |
Cco10g1169 | 1009 | FunFam | Squamosa promoter-binding-like protein 14 | 147 | 217 | - | - | |
Cco10g1169 | 1009 | Gene3D | - | 147 | 217 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco10g1169 | 1009 | SUPERFAMILY | SBT domain | 154 | 235 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco10g1169 | 1009 | MobiDBLite | consensus disorder prediction | 420 | 455 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0670 | Cco-Chr5:5457753 | Cco10g1169 | Cco-Chr10:24282185 | 1.70E-38 | dispersed | |
Cco07g0247 | Cco-Chr7:2526174 | Cco10g1169 | Cco-Chr10:24282185 | 1.30E-26 | dispersed | |
Cco10g1169 | Cco-Chr10:24282185 | Cco11g1969 | Cco-Chr11:32168942 | 1.70E-120 | dispersed | |
Cco10g1169 | Cco-Chr10:24282185 | Cco01g1751 | Cco-Chr1:30269990 | 9.00E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60104 | PF03110 | SBP | 1.50E-29 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1169 | - | - | - | 0.0 |