Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1169 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTCCTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCCGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGACGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGCAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAACAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGACGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGACTCTGCATGAACCCCAGAATTTGCTGAACAACGGGGCATTGATGGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAAGTATCTTTGAGATCTTCTAAACCACATGACACGATACCTATATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCGAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGCTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCGTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGTACCAAATGATTTTCCCCACGTTTTGCGAGCTCAGGTCCTCGATTGGTTATCACATAGTCCTACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTCACAATATACCTACGGCAGACTGAAGCTTCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATTGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTCAGAAACAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGACCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAAGAAGCTTCAGATGGGTCAACAGAAAGTGGTGAAGATGACAGCCGATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAAAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGTTGTTTCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACTCGTCCTTGAATCTCGCATTGATGGAGATGGGTTTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTCGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCCATTGATGGAGGGGCAGATAGCTTTCTGTTTAGACCCAATGCCATAGGCCCGGCTGGTCTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTTTAGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGATATTCCTAGTTCTCTCTCGGATAGTAGCTGGAATCAAAAGCCAAACACCGATTTGGCCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACACCATCTAGCGCGTCTCTGGTTTACAGACCTGCAATGCTCTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGCGTGGCTCTCCTATTTAAAAGCTCACCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTATGGTACTAGTTAG 3030 44.92 MEAGYGGEACQLYGMGPMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGTDLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGTLHEPQNLLNNGALMGKSDLVSTFLSNGPQVSLRSSKPHDTIPISETPVQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKVPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAMFSVKGINLTQPTTRLLCAIEGKYLTQEASDGSTESGEDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAKLEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDAGGHSSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASIDGGADSFLFRPNAIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDSSWNQKPNTDLASSRFEIGRTELKPSQQHCKLCVRKPLGCGTPSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24282185 24288963 - CcPI632755_10g011690.1 Cco10g1169 190127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1169 1009 Gene3D - 751 905 IPR036770 -
Cco10g1169 1009 SUPERFAMILY Ankyrin repeat 778 891 IPR036770 -
Cco10g1169 1009 MobiDBLite consensus disorder prediction 327 374 - -
Cco10g1169 1009 MobiDBLite consensus disorder prediction 357 374 - -
Cco10g1169 1009 MobiDBLite consensus disorder prediction 220 243 - -
Cco10g1169 1009 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
Cco10g1169 1009 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Cco10g1169 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1007 IPR044817 GO:0003677(InterPro)
Cco10g1169 1009 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Cco10g1169 1009 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco10g1169 1009 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco10g1169 1009 MobiDBLite consensus disorder prediction 420 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1169 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0670 Cco-Chr5:5457753 Cco10g1169 Cco-Chr10:24282185 1.70E-38 dispersed
Cco07g0247 Cco-Chr7:2526174 Cco10g1169 Cco-Chr10:24282185 1.30E-26 dispersed
Cco10g1169 Cco-Chr10:24282185 Cco11g1969 Cco-Chr11:32168942 1.70E-120 dispersed
Cco10g1169 Cco-Chr10:24282185 Cco01g1751 Cco-Chr1:30269990 9.00E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1169 . 181 1009 SBP-box Gene Family AT2G47070 55.4 3.6e-240 828.2
Cco10g1169 . 25 1009 SBP-box Gene Family AT3G60030 54.3 8.0e-274 940.3
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.9e-39 158.7
Cco06g1745 . 181 354 SBP-box Gene Family AT1G69170 54.0 1.1e-41 167.9
Cco10g1169 . 181 1009 SBP-box Gene Family AT2G47070 55.4 3.6e-240 828.2
Cco06g1745 . 181 354 SBP-box Gene Family AT1G69170 54.0 1.1e-41 167.9
Cco10g1169 . 25 1009 SBP-box Gene Family AT3G60030 54.3 8.0e-274 940.3
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50570 55.8 5.9e-39 158.7
Cco06g0208 . 20 163 SBP-box Gene Family AT5G50670 55.8 5.9e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60104 PF03110 SBP 1.50E-29 No_clan Cco TF