Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1169 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTCCTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCCGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAACAGTTCCTCGTCGTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATTGAAGATGAGAATCTTAATGACGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGCAATGGTTCTCAGATTGTTGAGAGAGAAGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGAGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAACAGATCTGAGCAATGCAAAAGATTATCACAGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCACTTGTTGCAAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGACGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAGTTAATCCAGATAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGTTATTTACTGTTAACACTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGAAAAAACCTATCTGGGACTCTGCATGAACCCCAGAATTTGCTGAACAACGGGGCATTGATGGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAAGTATCTTTGAGATCTTCTAAACCACATGACACGATACCTATATCTGAGACACCAGTACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCGAACAGCCCTCCTGCTTATTCAGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACAAACACTCCCAGTGCACATGGGAACAAGCTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCGTCTAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTGTTTGGGAAAGTACCAAATGATTTTCCCCACGTTTTGCGAGCTCAGGTCCTCGATTGGTTATCACATAGTCCTACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTCACAATATACCTACGGCAGACTGAAGCTTCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATTGCTATTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTCAGAAACAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGACCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAAGAAGCTTCAGATGGGTCAACAGAAAGTGGTGAAGATGACAGCCGATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCATTTATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGCACACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAAAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGTTGTTTCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCGAGATGGGACCGTGGATGCTGGAGGTCACTCGTCCTTGAATCTCGCATTGATGGAGATGGGTTTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTCGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCCATTGATGGAGGGGCAGATAGCTTTCTGTTTAGACCCAATGCCATAGGCCCGGCTGGTCTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTTTAGATGCATTAACCAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACGGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTAGTGCTGGATATTCCTAGTTCTCTCTCGGATAGTAGCTGGAATCAAAAGCCAAACACCGATTTGGCCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCATTGCAAGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACACCATCTAGCGCGTCTCTGGTTTACAGACCTGCAATGCTCTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGCGTGGCTCTCCTATTTAAAAGCTCACCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTATGGTACTAGTTAG 3030 44.92 MEAGYGGEACQLYGMGPMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESDHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVEREAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGTDLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKVNPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGTLHEPQNLLNNGALMGKSDLVSTFLSNGPQVSLRSSKPHDTIPISETPVQAIGRGGDTPAISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKVPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDNLCHDLSTSFNRLLDVSDDAFWRTGWVYVRVQHQIAIVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSTSKKAMFSVKGINLTQPTTRLLCAIEGKYLTQEASDGSTESGEDDSRCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICTLQSALELTETCSNSGETAKLEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDVLRDGTVDAGGHSSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASIDGGADSFLFRPNAIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDSSWNQKPNTDLASSRFEIGRTELKPSQQHCKLCVRKPLGCGTPSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24282185 24288963 - CcPI632755_10g011690.1 Cco10g1169 190127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1169 1009 Gene3D - 751 905 IPR036770 -
Cco10g1169 1009 SUPERFAMILY Ankyrin repeat 778 891 IPR036770 -
Cco10g1169 1009 MobiDBLite consensus disorder prediction 327 374 - -
Cco10g1169 1009 MobiDBLite consensus disorder prediction 357 374 - -
Cco10g1169 1009 MobiDBLite consensus disorder prediction 220 243 - -
Cco10g1169 1009 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
Cco10g1169 1009 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Cco10g1169 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1007 IPR044817 GO:0003677(InterPro)
Cco10g1169 1009 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Cco10g1169 1009 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco10g1169 1009 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco10g1169 1009 MobiDBLite consensus disorder prediction 420 455 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0670 Cco-Chr5:5457753 Cco10g1169 Cco-Chr10:24282185 1.70E-38 dispersed
Cco07g0247 Cco-Chr7:2526174 Cco10g1169 Cco-Chr10:24282185 1.30E-26 dispersed
Cco10g1169 Cco-Chr10:24282185 Cco11g1969 Cco-Chr11:32168942 1.70E-120 dispersed
Cco10g1169 Cco-Chr10:24282185 Cco01g1751 Cco-Chr1:30269990 9.00E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60104 PF03110 SBP 1.50E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1169 - - - 0.0