Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1172 ATGAACTGCTTTAGCTGCTGCGAGGAAGATGGAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGGAAAGCAAAATACAGGAAACAATGGGGGTTATCAAAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTACCATACCTGTCGAAGAACTGTCAGAAGTAACAGACAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGATGCTTAAAAATGGGCAGCCTGCTGCGATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTCTCGAGGCTGAAGCATGGAAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGGAGTTCCCGCATACTAGTATACGAGTATGCTTCCAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAACCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTCGAGTATTTGCATGAAAAGGCTGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATTGCTGACTTTGATTTGTCCAATCAAGCACCTGATATGGCAGCACGTCTTCACTCCACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCTGAATATGCTATGACGGGTCAATTGAATGCCAAGAGTGATGTATATAGCTTCGGCGTAGTCTTGCTTGAACTTTTGACAGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGCGTTGATGCAAGGCTTGGCGGAGACTACCCCCCAAAGGCGGTAGCAAAGTTAGCAGCTGTTGCTGCCTTGTGTGTGCAGTATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGTAA 1089 45.18 MNCFSCCEEDGIQKAADNGGMYAGKQNTGNNGGYQKPEAAPAVTQAVKMQPILVPTIPVEELSEVTDNFGNDALIGEGSYGRVYYGMLKNGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHGNFVQLLGYCIDGSSRILVYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24350094 24352382 + CcPI632755_10g011720.1 Cco10g1172 190130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1172 362 PIRSF ILK 27 353 - -
Cco10g1172 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Cco10g1172 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Cco10g1172 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1172 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Cco10g1172 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Cco10g1172 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
Cco10g1172 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1172 362 FunFam pto-interacting protein 1 145 356 - -
Cco10g1172 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1172 362 Gene3D Phosphorylase Kinase; domain 1 33 143 - -
Cco10g1172 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0578 Cco-Chr8:14896193 Cco10g1172 Cco-Chr10:24350094 1.50E-136 dispersed
Cco10g1172 Cco-Chr10:24350094 Cco10g1749 Cco-Chr10:31042897 2.90E-131 dispersed
Cco10g1172 Cco-Chr10:24350094 Cco06g0424 Cco-Chr6:4647797 3.30E-58 wgd
Cco10g1172 Cco-Chr10:24350094 Cco09g0448 Cco-Chr9:4006539 6.90E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87152 PF07714 PK_Tyr_Ser-Thr 5.70E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1172 K13436 - csv:101223136 709.909