Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1179 ATGTCTCGCCAAGTTCCGACCACTGCGTTCCACAAGTCCAAGACGCTTGATAACAAATATATGCTAGGAGATGAGATCGGAAAAGGAGCATATGGACGAGTCTACAAGGGTCTGGACTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATCATGCAAGAGATTGACTTACTGAAGAACTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTTGAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCGTTGGTTGCTGTTTATATCTCTCAGGTTCTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGGGACATAAAGGGTGCGAACATACTGACAACCAAAGAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCCGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCACCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATTGAACTACTTACATGCGTACCTCCGTATTATGATCTACAGCCTATGCCCGCTCTCTTTCGCATTGTACAGGACAAGCATCCTCCAATTCCGGATAGCCTATCACCAGATATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCGGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTAAGAAACACTCAACAAGATGGATCAATTGAAGCAGAAATTTCGAACGGAGACAATCAAAACTCTTGCGAAAGCCCTTCGGCAGAGAAAAATGAAGTCACTGATTCTGATTTTAAAGCTGATTCAAGGAAGGAAGTGTCATCAGATGATGCCACTGATGCGAGCAAGTCCCAAAAGCATTTTGCTTCAGGCCTTAATTTTGTTGAGGAAGGAGAAAGTCTAGAAGAAGATACCCTATTGGATCAGGTTCCTACGTTATCCATTCATGAAAATTCATCTCTCCTAACTGGTTCTGGCAGACTTACTACCTCTGAGCCGAATGAGTTTCATGAATCTCATGGTAGAGGCCATGATGAAGTGATAGTGAATGGTGAAGTGCCATTGGCAGAATTAAGGAAAGATGCTCCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAGTAGATCATTTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAGATGAGCTGAGTAAATTTAGTGACACTCCTGGAGATGCTTCCTTGGATGATTTATTCCAACCTCTAGATAAGCACCCCGGGGATCAAGCTGCTGGAGCATCAACATCTCTATCTACTCTACAATCAAACATGGGTAATGTGCCAGTAAATGATGTTGGGAAAAATGACCTGGCCACAAAATTGAGGGCTACGATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAGTGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAAACCTTTTCCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGGTCATTGAGACCTGATGAACCCGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGACCGGAGCAGAAAATTGTATATGTTACACAGCATGGTCTACTCCCGTTAACTGAGTTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAATGTTGACTTCCAAGAAAATGCCTGTCTTGTTGGTCTAATTCCTCTGGTAATGGGGTTTGCAGTTCCTGACCGTCCCCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTCGCGTGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGACTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTGCACTCTTAGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACGCTCTACAGCTTAAATGAGGCAACTCGCTTAGCATCCATAACAGTTGGGGCGGGATATCCAGTTGATGGTTTAACTCAACGGCCACGATCAGGTCAACTAGATCCTAGCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTATGCCTGATCAACCTGATCTTTTGAAGGTCAAACATGGAATAGTTGATCATCACCCGTCTTCTGGACCACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCGAATCAATCTGAGAATCGACGCTTTTCCATAGATGCTGATAGGCCTCAATCTAGCAATGCCACAAATGAAGCCTTGGGATCTAAACTGTCAGAGCTTGCATCTTTGGATAAGGTTTTACATTTAGCAAGCAAGGAATCGTCTGGCTTGGCTTCTAAAGAACATGAAAATTTAGATAGATGGAGAACTGAGCGAATGACAAACTCTAATAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGATTTCCTACAACATTGGCGGCTACTCAACAAGAGCAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCAACTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGACAATGGAAATGTTGACCCCACTTCTAAGATTTCTCTTAAAACGGTGGCAAAGAAGGTAGGGCCCCTGATTTCCAATGAGGGAGCTGCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGTTCGGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCCTCTGGACTTCTTTCGCACATGGTTTCAACTCTGAACGCTGATGTTGCAAGAGAATACCTGGCTAAGGTGGCTGATCTATTGCTCGAGTTTGCTCAAGCAGATACAACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACGGATCCAAATTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTTGAACTCAAAGAAGGGTCGTTGGTGTCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATTTCAGATTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCTCGTAATTCCAGGGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGCCTACTTGAGGATGACCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGATAATGACAACCGAAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAATTGGTGAAGTTTTTCCAGTGCTGTCCAGAACAACATTTTGTCCATATATTGGAGCCTTTCTTGAAAATCATCACGAAATCTTCCCGAATCAATACGACATTGGCTGTCAACGGATTGACCCCGTTGCTTATAGCAAGGCTGGACCACCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCAAAGCAGTTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGGGATGGACAACGGTCTGGAGGGCAAGTGTTGGTGAAACAAATGGCCACATCTCTGCTTAAAGCTCTTCATATAAATACTGTTTTGTAA 4269 42.35 MSRQVPTTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDGSIEAEISNGDNQNSCESPSAEKNEVTDSDFKADSRKEVSSDDATDASKSQKHFASGLNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLTTSEPNEFHESHGRGHDEVIVNGEVPLAELRKDAPRKHGEKETSTTSGSRSFGFEPESQDNSFQKVSKMSIALGGDELSKFSDTPGDASLDDLFQPLDKHPGDQAAGASTSLSTLQSNMGNVPVNDVGKNDLATKLRATIAQKQMENEMGQASGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFGRLVGSLRPDEPEDVIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRCTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTQRPRSGQLDPSHPIFSQYEASFPMPDQPDLLKVKHGIVDHHPSSGPPEPSRASTSHSQRSDANQSENRRFSIDADRPQSSNATNEALGSKLSELASLDKVLHLASKESSGLASKEHENLDRWRTERMTNSNRTSTDRPPKLVEPASNGFPTTLAATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASNEKKINGEHDFLMAEFAEVSQRGKDNGNVDPTSKISLKTVAKKVGPLISNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDDLWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24408409 24432587 + CcPI632755_10g011790.1 Cco10g1179 190137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1179 1422 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Cco10g1179 1422 SMART serkin_6 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 MobiDBLite consensus disorder prediction 422 454 - -
Cco10g1179 1422 Gene3D - 581 785 IPR011989 -
Cco10g1179 1422 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 842 856 - -
Cco10g1179 1422 Gene3D - 1073 1417 IPR011989 -
Cco10g1179 1422 FunFam MAP3K epsilon protein kinase 1-like 1071 1417 - -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 832 880 - -
Cco10g1179 1422 CDD STKc_Cdc7_like 19 274 - -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 436 454 - -
Cco10g1179 1422 SUPERFAMILY ARM repeat 588 782 IPR016024 -
Cco10g1179 1422 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Cco10g1179 1422 SUPERFAMILY ARM repeat 1083 1396 IPR016024 -
Cco10g1179 1422 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Cco10g1179 1422 SMART arm_5 1202 1241 IPR000225 GO:0005515(InterPro)
Cco10g1179 1422 SMART arm_5 701 744 IPR000225 GO:0005515(InterPro)
Cco10g1179 1422 SMART arm_5 1156 1200 IPR000225 GO:0005515(InterPro)
Cco10g1179 1422 MobiDBLite consensus disorder prediction 469 502 - -
Cco10g1179 1422 Gene3D Transferase(Phosphotransferase) domain 1 17 314 - -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 904 922 - -
Cco10g1179 1422 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 311 1422 IPR052441 -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 900 943 - -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 288 349 - -
Cco10g1179 1422 FunFam MAP3K epsilon protein kinase 1 578 786 - -
Cco10g1179 1422 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 MobiDBLite consensus disorder prediction 320 346 - -
Cco10g1179 1422 MobiDBLite consensus disorder prediction 288 319 - -
Cco10g1179 1422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1179 1422 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1740 Cco-Chr8:28648494 Cco10g1179 Cco-Chr10:24408409 6.50E-50 dispersed
Cco10g1179 Cco-Chr10:24408409 Cco11g1840 Cco-Chr11:31059705 7.70E-42 dispersed
Cco10g1179 Cco-Chr10:24408409 Cco06g0604 Cco-Chr6:6570251 2.70E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87153 PF00069 Pkinase 1.30E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1179 - - - 0.0