Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1180 | ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCGGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATATTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATTAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCGGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA | 1233 | 44.69 | MAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 24434808 | 24438906 | - | CcPI632755_10g011800.1 | Cco10g1180 | 190138 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1180 | 410 | Gene3D | - | 27 | 245 | IPR027417 | - | |
Cco10g1180 | 410 | SMART | ultradead3 | 56 | 253 | IPR014001 | - | |
Cco10g1180 | 410 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 37 | 65 | IPR014014 | GO:0003724(InterPro) | |
Cco10g1180 | 410 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 105 | 393 | IPR027417 | - | |
Cco10g1180 | 410 | SMART | helicmild6 | 290 | 371 | IPR001650 | - | |
Cco10g1180 | 410 | Pfam | Helicase conserved C-terminal domain | 263 | 371 | IPR001650 | - | |
Cco10g1180 | 410 | Gene3D | - | 246 | 410 | IPR027417 | - | |
Cco10g1180 | 410 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 31 | 395 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER) | |
Cco10g1180 | 410 | FunFam | Eukaryotic initiation factor 4A-III | 244 | 410 | - | - | |
Cco10g1180 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | IPR001650 | - | |
Cco10g1180 | 410 | Pfam | DEAD/DEAH box helicase | 62 | 224 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cco10g1180 | 410 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | IPR014001 | - | |
Cco10g1180 | 410 | CDD | DEADc_EIF4AIII_DDX48 | 39 | 239 | - | - | |
Cco10g1180 | 410 | CDD | SF2_C_DEAD | 250 | 380 | - | - | |
Cco10g1180 | 410 | FunFam | Eukaryotic initiation factor 4A-III | 21 | 241 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0203 | Cco-Chr5:1586778 | Cco10g1180 | Cco-Chr10:24434808 | 2.90E-75 | dispersed | |
Cco07g1466 | Cco-Chr7:28775908 | Cco10g1180 | Cco-Chr10:24434808 | 1.20E-140 | dispersed | |
Cco10g1180 | Cco-Chr10:24434808 | Cco10g1390 | Cco-Chr10:26956633 | 7.10E-57 | dispersed | |
Cco10g1180 | Cco-Chr10:24434808 | Cco09g0073 | Cco-Chr9:627065 | 1.60E-141 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1180 | K13025 | - | csv:101222664 | 803.512 |