Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1180 ATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGATGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCGGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTTTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATATTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTGGGTGAAGATATTAGAAAGCTTGAGTTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCGGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATTTAA 1233 44.69 MAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24434808 24438906 - CcPI632755_10g011800.1 Cco10g1180 190138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1180 410 Gene3D - 27 245 IPR027417 -
Cco10g1180 410 SMART ultradead3 56 253 IPR014001 -
Cco10g1180 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Cco10g1180 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Cco10g1180 410 SMART helicmild6 290 371 IPR001650 -
Cco10g1180 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Cco10g1180 410 Gene3D - 246 410 IPR027417 -
Cco10g1180 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Cco10g1180 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
Cco10g1180 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Cco10g1180 410 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco10g1180 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Cco10g1180 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Cco10g1180 410 CDD SF2_C_DEAD 250 380 - -
Cco10g1180 410 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0203 Cco-Chr5:1586778 Cco10g1180 Cco-Chr10:24434808 2.90E-75 dispersed
Cco07g1466 Cco-Chr7:28775908 Cco10g1180 Cco-Chr10:24434808 1.20E-140 dispersed
Cco10g1180 Cco-Chr10:24434808 Cco10g1390 Cco-Chr10:26956633 7.10E-57 dispersed
Cco10g1180 Cco-Chr10:24434808 Cco09g0073 Cco-Chr9:627065 1.60E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1180 K13025 - csv:101222664 803.512