Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1193 | ATGTTGAGCTCCAGCAACCTCACCGTCATCTCCTCCAGTGAATTCCCGTCTCAGAGATTGCTTGCACGACAGCTCTTCTTACCTGACATCCAAATTTTAGAGATCTTCATTGCAATTTCTGTTTTTACAGCAATAAAATCATTGAGACAAAGTAGGAAACAGGGTTTACCTGTATGGCCGATCGTCGGAATGTTACCGTCTTTGGTCATGGGACTTCGAGGCAACTTGTATGAATGGATCACCGAAGTTCTGTACCATCAAAATGGAACTTTCAGATTCAAAGGACCATGGTTTAGTAGCTTGAATTGTGTTGTAACTTCAGATCCTCGTAACATTGAGCACATTCTGAAAACAGAGTTTCCCAAGTATCCAAAAGGCTCCTTCTTCCGTGAAACAGTTCGTGACCTTCTTGGCGACGGAATCTTCAACGCTGACGGCGAGGTTTGGCACCAGCAGAGGAAGACAGCCAGCATCGAGTTCCATTCAGCAAAGTTCCGGCAACTAACCGTGGAGTCTCTTCACGAGTTAGTCCACTCTCGGCTCCTCCCTGTTTTACACAGGCATTTCGTCGAACAGTTGGTGCCCATTGATCTCCAAGACATTCTTCTCCGCCTAACTTTCGACAATGTCTGTATGATCGCATTTGGCGTCGATCCCGGCTGTTCGAGCCCTAATTTACCAGCGATTCTTTTCGCCAATGCCTTCGAGGTGGCAACGGAAGCCACCGTCCTTCGATTCGTAACTCCGAAATTCATATGGAAAACGATGAGGCATTTCAATTTAGGAACAGAAAAGAGACTCAAATTTGCCCTAAAAGAGGTCAATCAATTCGCGAAGAACGTAATTGAAAAGAGAAAAAGAGAGAATGGCAATGAAATCAAGGGATCCGACCTGCTATCGGTGTTTATGGGACTGAAGGACGAGAACGGGGAGCCATATTCGGAGAAGTTCTTGAAAGATATATGCGTGAATTTTATACTTGCCGGGAGAGATACCTCGTCGGTGGCGTTAAGTTGGTTCTTTTGGCTGATTGATCGGAATCCGGAAGTGGAAGAGAGGATTCTGGCGGAGATCTGCCGGATATTGGAGAAGAGAGGAGAGGCGGCGGCGGTGGGATCGTCGGGCGGCGATGTGGCGTTTGAAGTAGAGGAGATAAAGAAGATGGAATATTTGCAGGCTGCTCTTTCTGAAGCTTTGAGATTGTTCCCTTCGGTGCCTGTTGATCACAAGGAGGCCATTAAAGATGATGTATTACCAGATGGAACAAAGGTAAAGAAAGGAACAAAAGTGATCTATGCAATATATGCAATGGGCAGAACAGAGGCAATATGGGGAAAAGATTGCAACGAGTTCAAGCCGGAGAGATGGTTAAGAGATGGTCGATTTATGGCCAAGTCAGCATACCGGTTCACAGCCTTCAACGGCGGGCCTCGACTATGCTTGGGAAAGGATTTTGCATATTACCAAATGAAGTATACCGCGGCCTCCATCATCCTCCGCTACCGTGTTAGGGTGGCGGAGAAGCACCCTGTGGTGCCAAAGCTTGCTCTGACAATCTACATGAAATATGGGTTGAAGGTGAATATGTTTAAACGTGACAAGGAAGAGCTTCAAAAATATTTCAAAAGTAAATAA | 1635 | 45.93 | MLSSSNLTVISSSEFPSQRLLARQLFLPDIQILEIFIAISVFTAIKSLRQSRKQGLPVWPIVGMLPSLVMGLRGNLYEWITEVLYHQNGTFRFKGPWFSSLNCVVTSDPRNIEHILKTEFPKYPKGSFFRETVRDLLGDGIFNADGEVWHQQRKTASIEFHSAKFRQLTVESLHELVHSRLLPVLHRHFVEQLVPIDLQDILLRLTFDNVCMIAFGVDPGCSSPNLPAILFANAFEVATEATVLRFVTPKFIWKTMRHFNLGTEKRLKFALKEVNQFAKNVIEKRKRENGNEIKGSDLLSVFMGLKDENGEPYSEKFLKDICVNFILAGRDTSSVALSWFFWLIDRNPEVEERILAEICRILEKRGEAAAVGSSGGDVAFEVEEIKKMEYLQAALSEALRLFPSVPVDHKEAIKDDVLPDGTKVKKGTKVIYAIYAMGRTEAIWGKDCNEFKPERWLRDGRFMAKSAYRFTAFNGGPRLCLGKDFAYYQMKYTAASIILRYRVRVAEKHPVVPKLALTIYMKYGLKVNMFKRDKEELQKYFKSK | 544 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 24577506 | 24580076 | - | CcPI632755_10g011930.1 | Cco10g1193 | 190151 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1193 | 544 | FunFam | Cytochrome P450 | 46 | 535 | - | - | |
| Cco10g1193 | 544 | PANTHER | CYTOCHROME P450 | 45 | 525 | - | - | |
| Cco10g1193 | 544 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 473 | 482 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco10g1193 | 544 | Gene3D | Cytochrome P450 | 52 | 543 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | E-class P450 group I signature | 392 | 410 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | E-class P450 group I signature | 470 | 480 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | E-class P450 group I signature | 480 | 503 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | SUPERFAMILY | Cytochrome P450 | 55 | 532 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | Pfam | Cytochrome P450 | 55 | 515 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | CDD | CYP86A | 91 | 525 | - | - | |
| Cco10g1193 | 544 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | P450 superfamily signature | 471 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | P450 superfamily signature | 393 | 404 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco10g1193 | 544 | PRINTS | P450 superfamily signature | 480 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g0370 | Cco-Chr6:4134889 | Cco10g1193 | Cco-Chr10:24577506 | 9.00E-124 | dispersed | |
| Cco10g1193 | Cco-Chr10:24577506 | Cco11g0907 | Cco-Chr11:12415077 | 1.60E-85 | dispersed | |
| Cco05g1540 | Cco-Chr5:19408416 | Cco10g1193 | Cco-Chr10:24577506 | 3.50E-85 | transposed | |
| Cco06g1980 | Cco-Chr6:29952874 | Cco10g1193 | Cco-Chr10:24577506 | 3.00E-92 | transposed | |
| Cco10g1628 | Cco-Chr10:29649113 | Cco10g1193 | Cco-Chr10:24577506 | 7.40E-104 | transposed | |
| Cco10g1193 | Cco-Chr10:24577506 | Cco09g0436 | Cco-Chr9:3891241 | 2.00E-208 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1193 | K15402 | - | cit:102607755 | 773.081 |