Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1206 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGTTTCTTCCTCCCCAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAACGAAACTCTACGTAGACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCCTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGACACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGA 771 44.36 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEFLPPQKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSPDMACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24739069 24742996 + CcPI632755_10g012060.1 Cco10g1206 190164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1206 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco10g1206 256 Gene3D - 14 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco10g1206 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 Pfam K-box region 91 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g1206 256 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco10g1206 256 Coils Coil 154 174 - -
Cco10g1206 256 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Cco10g1206 256 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 Coils Coil 128 148 - -
Cco10g1206 256 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco10g1206 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0488 Cco-Chr4:15779386 Cco10g1206 Cco-Chr10:24739069 8.40E-40 dispersed
Cco10g1206 Cco-Chr10:24739069 Cco04g1600 Cco-Chr4:31320580 4.20E-23 dispersed
Cco10g1206 Cco-Chr10:24739069 Cco05g0237 Cco-Chr5:1844298 9.60E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60105 PF01486 K-box 1.60E-17 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1206 - - - 0.0