Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1225 | ATGAATCATTTAACTGTTGACTGTGAGGATTCTTTTTATAGTTTACTGGAACTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCTGGTGGATCTGTAAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAATAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTGCTGATGGGTTTGGGAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGACGGCACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAATGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCGTTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTTTGAATGCCAGGGATATGCCTTTAGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCTGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCAGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTTATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCTCCCAATGGAAAGGTAGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTACCCGGGATGGGTGCTGCAGCATCCGGTGAAGCTGAAGGGTCTGAACAGAGTCAAGTCAGTCATTCTCTGGGCCAAAGGAAACTTGTCCAGGAGGAGGATGATGTGTATTGCTAA | 2097 | 45.73 | MNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFADGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSFIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEAEGSEQSQVSHSLGQRKLVQEEDDVYC | 698 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 24962894 | 24965463 | + | CcPI632755_10g012250.1 | Cco10g1225 | 190183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1225 | 698 | Gene3D | - | 274 | 337 | - | - | |
Cco10g1225 | 698 | Gene3D | - | 10 | 159 | IPR036770 | - | |
Cco10g1225 | 698 | MobiDBLite | consensus disorder prediction | 378 | 400 | - | - | |
Cco10g1225 | 698 | SUPERFAMILY | Ankyrin repeat | 15 | 136 | IPR036770 | - | |
Cco10g1225 | 698 | PRINTS | Ankyrin repeat signature | 111 | 125 | IPR002110 | GO:0005515(InterPro) | |
Cco10g1225 | 698 | PRINTS | Ankyrin repeat signature | 93 | 108 | IPR002110 | GO:0005515(InterPro) | |
Cco10g1225 | 698 | MobiDBLite | consensus disorder prediction | 662 | 698 | - | - | |
Cco10g1225 | 698 | SMART | ANK_2a | 57 | 87 | IPR002110 | GO:0005515(InterPro) | |
Cco10g1225 | 698 | SMART | ANK_2a | 92 | 124 | IPR002110 | GO:0005515(InterPro) | |
Cco10g1225 | 698 | ProSiteProfiles | Ankyrin repeat profile. | 92 | 127 | IPR002110 | GO:0005515(InterPro) | |
Cco10g1225 | 698 | MobiDBLite | consensus disorder prediction | 171 | 218 | - | - | |
Cco10g1225 | 698 | ProSiteProfiles | Ankyrin repeat region circular profile. | 92 | 126 | - | - | |
Cco10g1225 | 698 | Pfam | Ankyrin repeats (3 copies) | 22 | 126 | IPR002110 | GO:0005515(InterPro) | |
Cco10g1225 | 698 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 299 | IPR000571 | GO:0046872(InterPro) | |
Cco10g1225 | 698 | PANTHER | UNKEMPT FAMILY MEMBER | 47 | 651 | IPR045234 | - | |
Cco10g1225 | 698 | ProSiteProfiles | Zinc finger C3H1-type profile. | 279 | 301 | IPR000571 | GO:0046872(InterPro) | |
Cco10g1225 | 698 | MobiDBLite | consensus disorder prediction | 672 | 686 | - | - | |
Cco10g1225 | 698 | FunFam | Zinc finger CCCH domain-containing protein 66 | 232 | 300 | - | - | |
Cco10g1225 | 698 | MobiDBLite | consensus disorder prediction | 171 | 192 | - | - | |
Cco10g1225 | 698 | SMART | c3hfinal6 | 274 | 300 | IPR000571 | GO:0046872(InterPro) | |
Cco10g1225 | 698 | SMART | c3hfinal6 | 309 | 332 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco10g1225 | Cco-Chr10:24962894 | Cco10g1692 | Cco-Chr10:30465501 | 1.60E-226 | dispersed | |
Cco10g1225 | Cco-Chr10:24962894 | Cco02g2086 | Cco-Chr2:33755065 | 1.90E-131 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60106 | PF12796 | Ank_2 | 1.00E-09 | CL0465 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1225 | - | - | - | 0.0 |