Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1225 ATGAATCATTTAACTGTTGACTGTGAGGATTCTTTTTATAGTTTACTGGAACTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCTGGTGGATCTGTAAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAATAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTGCTGATGGGTTTGGGAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACCGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGACGGCACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAATGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCGTTGGGTCTTCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTTTGAATGCCAGGGATATGCCTTTAGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCTGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCAGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTTGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTTATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCTCCCAATGGAAAGGTAGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTACCCGGGATGGGTGCTGCAGCATCCGGTGAAGCTGAAGGGTCTGAACAGAGTCAAGTCAGTCATTCTCTGGGCCAAAGGAAACTTGTCCAGGAGGAGGATGATGTGTATTGCTAA 2097 45.73 MNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFADGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSFIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEAEGSEQSQVSHSLGQRKLVQEEDDVYC 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24962894 24965463 + CcPI632755_10g012250.1 Cco10g1225 190183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1225 698 Gene3D - 274 337 - -
Cco10g1225 698 Gene3D - 10 159 IPR036770 -
Cco10g1225 698 MobiDBLite consensus disorder prediction 378 400 - -
Cco10g1225 698 SUPERFAMILY Ankyrin repeat 15 136 IPR036770 -
Cco10g1225 698 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515(InterPro)
Cco10g1225 698 PRINTS Ankyrin repeat signature 93 108 IPR002110 GO:0005515(InterPro)
Cco10g1225 698 MobiDBLite consensus disorder prediction 662 698 - -
Cco10g1225 698 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Cco10g1225 698 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Cco10g1225 698 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Cco10g1225 698 MobiDBLite consensus disorder prediction 171 218 - -
Cco10g1225 698 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Cco10g1225 698 Pfam Ankyrin repeats (3 copies) 22 126 IPR002110 GO:0005515(InterPro)
Cco10g1225 698 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 299 IPR000571 GO:0046872(InterPro)
Cco10g1225 698 PANTHER UNKEMPT FAMILY MEMBER 47 651 IPR045234 -
Cco10g1225 698 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872(InterPro)
Cco10g1225 698 MobiDBLite consensus disorder prediction 672 686 - -
Cco10g1225 698 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Cco10g1225 698 MobiDBLite consensus disorder prediction 171 192 - -
Cco10g1225 698 SMART c3hfinal6 274 300 IPR000571 GO:0046872(InterPro)
Cco10g1225 698 SMART c3hfinal6 309 332 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1225 Cco-Chr10:24962894 Cco10g1692 Cco-Chr10:30465501 1.60E-226 dispersed
Cco10g1225 Cco-Chr10:24962894 Cco02g2086 Cco-Chr2:33755065 1.90E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60106 PF12796 Ank_2 1.00E-09 CL0465 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1225 - - - 0.0