Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1229 ATGAAAGAACCCACATTATCGCGGGTGATTTTAGTAGTAAGAGAAGTCTCCTTGCCGAAACAACAGCTCTTACTTCCTCTCTTTGCAACTCGAAAGTCGAATCGAAACTCCTGCTCTCTCCTCAACCTTCAACGCCCCAACCCCGCGTTTGAGAAATTAGGGTTTCTCTGCAGAGAAATGGCGTTGGCCAGTCGCATCCGATCCACCATCCCTGCCCTCATCATTTCGGTTTTGGATTGCAAATATGCTTATCTTGTTCGTTGCCTCATCTATGTCGGATTTGAGGTCAAATGTGGAGGCCTTCTCTCAAGGACTTATGCCGCTACATCAGGGAAAAATGAAGGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGCCCCACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAACGAAATTTCTGCTGAAGCTAAATTTTCAGACACTGTAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCAGCACAAGAAGAGAAAGAGTTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGAGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTAACTCTTGATGCATTTCTTGGGGTCTCAAATGCAGAAGAGATAGGATCTAAATTTTCAAACTCTGTTCTTGATCAGGCCCCACTTCTTTCTGGATGGTTTTATGATCCCTCTTCTGGGGGAAGTTTCACCCTCCCCAAGTAA 1050 43.81 MKEPTLSRVILVVREVSLPKQQLLLPLFATRKSNRNSCSLLNLQRPNPAFEKLGFLCREMALASRIRSTIPALIISVLDCKYAYLVRCLIYVGFEVKCGGLLSRTYAATSGKNEGKVKVPIALFGGSGNYASALYLAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDTVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPAQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVTLDAFLGVSNAEEIGSKFSNSVLDQAPLLSGWFYDPSSGGSFTLPK 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25019161 25024424 - CcPI632755_10g012290.1 Cco10g1229 190187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1229 349 Pfam ATP synthase delta (OSCP) subunit 128 297 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 PANTHER ATP SYNTHASE DELTA CHAIN 108 302 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cco10g1229 349 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 261 280 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 Gene3D - 127 219 IPR026015 -
Cco10g1229 349 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 127 228 IPR026015 -
Cco10g1229 349 NCBIfam ATP synthase F1 subunit delta 129 298 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 PRINTS ATP synthase delta subunit signature 196 207 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 PRINTS ATP synthase delta subunit signature 207 221 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 PRINTS ATP synthase delta subunit signature 274 292 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 PRINTS ATP synthase delta subunit signature 126 145 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 PRINTS ATP synthase delta subunit signature 259 274 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco10g1229 349 Hamap ATP synthase subunit delta [atpD]. 122 301 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0341 Cco-Chr8:6719707 Cco10g1229 Cco-Chr10:25019161 1.40E-09 transposed
Cco10g1229 Cco-Chr10:25019161 Cco09g0400 Cco-Chr9:3641064 8.10E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1229 K02137 - rcu:8272168 329.331