Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1254 ATGGAGTTGGGTTTGAGATTAGGAAATGATCCGCCATTTGTATTCCCTCAAAAACCTCCTCCTTCTTCTTCTTCTTCACACCCAACACCACTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCTCCTCATGAACATCGAACCCACAATCACAAACACCATAACCACCTCCTTCCCCATTCTCTCAACTCTCCTCCGCCGCCCGCCGCCACTTCTCGTCGATCTTCTCAAACTGAAGGATCAGAAGGAGCAGGTGTTTTTACGGAGGTGATAAGTGGAGCGGCTGCGGCGGCGGACGGCGAGGGAGGAGAATTCGGAAGAGGCAACGGAATAGTTTTGTCAACATACAGAAACAGAAATGAAAAGGAAGAAAAAAGAGAGAATGAAGAAGAAGAAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAATTGGGTTGCAGAAAAAAACTGAGGCTTTCACGACAACAATCGGCTTTTCTTGAAGAAAGCTTCAAACAACACCATACACTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGACTGAATCTTCTTCCTCGTCAAGTAGAAGTTTGGTTTCAAAATAGACGAGCAAGAACGAAGCTGAAGCAAACAGAAGTAGAGTGTGAATACTTGAAGAAATGTTGCGCAACATTGACCCAACAAAACACAAAGCTTCAAAAGGAACTTCAAGATTTGAGAGCTTTAAAAACCACCCATTCTCTCTTCATGCACTCCCCCGCCACCACTCTCACCTTGTGCGCGTCTTGTGAACGCGCCGCCGCAACCCCAAACTCCCGTTGA 819 44.93 MELGLRLGNDPPFVFPQKPPPSSSSSHPTPLDFSLSFSSILQPPHEHRTHNHKHHNHLLPHSLNSPPPPAATSRRSSQTEGSEGAGVFTEVISGAAAAADGEGGEFGRGNGIVLSTYRNRNEKEEKRENEEEEDEDEEEEEEEEEEMKLGCRKKLRLSRQQSAFLEESFKQHHTLYPKQKLEVARRLNLLPRQVEVWFQNRRARTKLKQTEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFMHSPATTLTLCASCERAAATPNSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25296138 25299102 - CcPI632755_10g012540.1 Cco10g1254 190212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1254 272 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco10g1254 272 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677(InterPro)
Cco10g1254 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 267 IPR050762 -
Cco10g1254 272 MobiDBLite consensus disorder prediction 120 151 - -
Cco10g1254 272 Coils Coil 113 149 - -
Cco10g1254 272 Pfam Homeobox associated leucine zipper 208 242 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1254 272 Pfam Homeodomain 152 206 IPR001356 GO:0003677(InterPro)
Cco10g1254 272 SUPERFAMILY Homeodomain-like 150 217 IPR009057 -
Cco10g1254 272 MobiDBLite consensus disorder prediction 27 44 - -
Cco10g1254 272 Coils Coil 221 241 - -
Cco10g1254 272 MobiDBLite consensus disorder prediction 1 84 - -
Cco10g1254 272 SMART halz 208 251 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco10g1254 272 MobiDBLite consensus disorder prediction 68 84 - -
Cco10g1254 272 MobiDBLite consensus disorder prediction 128 145 - -
Cco10g1254 272 Gene3D - 156 206 - -
Cco10g1254 272 SMART HOX_1 150 212 IPR001356 GO:0003677(InterPro)
Cco10g1254 272 CDD homeodomain 152 209 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco10g1254 Cco-Chr10:25296138 Cco10g1745 Cco-Chr10:31007523 6.00E-44 dispersed
Cco10g1254 Cco-Chr10:25296138 Cco09g0363 Cco-Chr9:3298066 3.70E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60109 PF00046 Homeodomain 1.00E-13 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1254 K09338 - csv:101208907 284.648