Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1266 ATGGGCATTGAAACAGTTCAGAATGACGTCATTTTCCGGTCAAAACTGCCGGACATCTACATCCCAAAGCACCTTCCTCTGCACTCCTACTGCCTACACGAAAACGCCACCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTGTCAGCACGCAAAGTCGCCGCCGGATTAAACAAGCTCGGCATTACAAAAGGCGATGTAATTATGCTCCTCCTCCCAAATTCGCCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCAAAATTAATCGTAACGCAATCGTCGTATTACGAAAAAGTAAAGGAAATAACAGAGGAATTAGCCGACGTTAAAATCATGACGGTCGATTCTCCACCAGACGGTTGTTTATGGTTCGGCGATCTAATCAAAGCCGGGGAAGGAGATACTCCGAGGGTGGAAATCGACCCCGACGACGTCGTTGCGCTTCCGTATTCCTCTGGAACAACCGGATTACCGAAAGGCGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTATTATGGAAATGAGGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCGGTTTTGCTCTGTGGATTACGAGCCGGCGCTGCGATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAAATACAGAGTGTCCATTGCGCCGATTGTGCCGCCCATTGTTTTGGCTATTGCCAAGTCGCCGGACCTTGAGAAGTATGATCTTTCATCCATCAGAGTGATCAAATGCGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCCGTGCTCGGCCAGGGATACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCCGGCGCCTGCGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCAGCTCATTGCCTCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGTGACATCGGATTCATCGACGAAGATGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTTGAAGCTCTGTTGCTGACTCATCCGGTGATTTCGGATGCGGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTCACTGAGGATGAAATTAAACTATTTGTTTCAAGACAGGTGGTTTTCTACAAAAGAATCAACCGGGTATTTTTCATAGATGCAATTCCCAAATCGCCCTCAGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAATTGGCAGCTGCTTTTCCAAATTCTAATTAA 1641 48.87 MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENATKIGDRTCLINGVTGESFTYNDVDLSARKVAAGLNKLGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELADVKIMTVDSPPDGCLWFGDLIKAGEGDTPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGAAILIMPKFEIGLLLQLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKLFVSRQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAAFPNSN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25399980 25404591 - CcPI632755_10g012660.1 Cco10g1266 190224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1266 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Cco10g1266 546 SUPERFAMILY Acetyl-CoA synthetase-like 19 540 - -
Cco10g1266 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Cco10g1266 546 CDD 4CL 21 534 - -
Cco10g1266 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Cco10g1266 546 Gene3D - 439 541 IPR045851 -
Cco10g1266 546 Pfam AMP-binding enzyme 33 402 IPR000873 -
Cco10g1266 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Cco10g1266 546 Gene3D - 5 438 IPR042099 -
Cco10g1266 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0809 Cco-Chr2:9044451 Cco10g1266 Cco-Chr10:25399980 6.20E-189 dispersed
Cco05g1735 Cco-Chr5:25701367 Cco10g1266 Cco-Chr10:25399980 1.30E-101 dispersed
Cco09g0343 Cco-Chr9:3038767 Cco10g1266 Cco-Chr10:25399980 7.60E-224 dispersed
Cco09g0344 Cco-Chr9:3048826 Cco10g1266 Cco-Chr10:25399980 1.90E-222 dispersed
Cco10g0597 Cco-Chr10:7965574 Cco10g1266 Cco-Chr10:25399980 3.30E-29 dispersed
Cco10g1266 Cco-Chr10:25399980 Cco11g1304 Cco-Chr11:25655547 1.50E-208 dispersed
Cco10g1266 Cco-Chr10:25399980 Cco06g1522 Cco-Chr6:25715960 1.40E-209 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1266 K01904 - csv:101215427 1000.35