Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1271 | ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTATTATATTCTGTATGAGGAGGTCGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTCCTTAAATCACACTGCTCTTTTGTCAATGGCCATGATTTGTGGATCGTTATGCCCTACATGTCTGGAGGTTCGTGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTTGAGGAAGTGGTCATAGCAACAGTATTGCGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGCAGGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCGGCTTGTCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAACGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGACTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAAGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTTAGATAATGAAGAGAATGGCATGTTGCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAGAGGGTAAAAAATCTATCAATGAATCAACAATTATTGGTTCTTCCTCTCAACATTATTCTTCACCCATTGAGAATGGCTCCAATGAGGAGTTTCATTTGGAGAGCAGCAAAAGAATTTTGGGGAATACTCCTAATTCTAGCCAACATAAAAGAAGTATTTCTTCTAATACCGCTATTCAACAAGAAATCAGTTCACCACTGAACAGAAGAGAGAGTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTCTTGCAATTGGAATGACTTCTCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGATGTAGAAAAGGCAGCTGCATCCCCTATTTTGCAAAAAAGTCACAGTATGCAGGTTGGTAATTCTGAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCGCAATCGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCAGCGGCCCATATAACAGCAACGGAAAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGATATTACGAGCGAGAGATGAAATCCAAAGATTAAAATTAAACAATGCAGAGTTGAATTATGAAGTAGTGCCATTAGCGGAGAAAAAGCTTCCTCTCGTCTCGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGAGAGAAGAAGGTAACCTTACAGGTCATTTCCACTGTAGTATTGTTCTTCCGCTTGATATGGTTTTCTTCAAAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACGCGACCCCACTTCCACTCTAGCTAACTGGATTGAGGCTATTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCAAAGCTCAGCTTGATTGATGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGATATTGTTAACAGTTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTAGAAATCTTCACCGCCTTCGCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCCAGGCTTACTGTAATAAGTCTTAGGGAGAACAGGCTAAATGGCACAGTTCCACCTTCTCTTTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCTTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAATCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCTGGCGAACTGCCTGCACTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTGGCTGGCATGGGGCTTGGAGGGAGGCTGCCCAGTTCTATTGGTCATCTGGGTGTCAATTTTTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAGTTTAGCCAAGCTTTCCAAACTTGCAGGACTGAATTTGACATCAAATCTACTAAACGGAACAATTCCCGCAGACATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAAACATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATTTAACTCAGATGATTTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTTAGCGTTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCTGGAAATATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAACAATTTTCAAGGAAACTTGCCCATTGAGCTTAGCAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTACTAAATTTTTCAAATAATTCCCTCCAAGGTCATCTTCCAGATTCCCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAGCCAGTCTAGGTAAGCTCCAATCTCTCACTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACACCTCTGTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATTCCAGCCTGTTCTGGCAAGAGAAATCGGTTTCAATCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCGTATCAACAATATGCTGTGGGATTGGTTGTCAACGTCTAAAAGCAATTGTTTCAGCACGAAATAGTGCGTCATCAAGGAGATCAAAGATGCCAGATTTTGTGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAGGCCACTGGAGGTTTTGATGAACGGAGACTAATTGGTTCAGGCAGCTATGGACAAGTCTATAAAGGCGTTCTTCCAGATGGAACAACTGTAGCTGTTAAGGTTTTGCATACACAATCTGGAAACTCCACAAAGAGTTTTAACAGAGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCAACGTTCACCTACCAGCTCGGCTTCGGGTTCTTCAGATTTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGTAATGTACTTCTAAAGGATGACATGACAGCCCTTGTTTCTGACTTCGGGATCTCAAGGCTAATGACCCCTGGAATTGGAAGCGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAG | 4786 | 40.7 | MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEILDNEENGMLRRQPSMKANDTVEGKKSINESTIIGSSSQHYSSPIENGSNEEFHLESSKRILGNTPNSSQHKRSISSNTAIQQEISSPLNRRESYETEKNGANGSLAIGMTSQAVDDVLSDSHSKDPKSSLSPATNDEEQDEKAKAPVIQQKGRFKVTSESVDVEKAAASPILQKSHSMQVGNSEVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQIAIGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLKLNNAELNYEVVPLAEKKLPLVSKKKCKAVKDDMMREEGNLTGHFHCSIVLPLDMVFFKAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIRDPTSTLANWIEAIDVCNFTGVACDRHRHRVSKLSLIDVGLVGKIPPFLSNLTGLRILDIVNSYLFGEIPSELFSLRNLHRLRLDSNSLEGPIPTSLASLSRLTVISLRENRLNGTVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPALLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPSSIGHLGVNFSVLSLQENQIFGSIPPSLAKLSKLAGLNLTSNLLNGTIPADISRLSKLEQLFLSHNLFTSNIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMIYLFLNHNLLSGTIPLALVKCTGLQKLDLSFNMLSGNIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLLNFSNNSLQGHLPDSLGELENLESFDISKNQLSGMIPASLGKLQSLTYLNLSFNNFQGMIPREGFFKSSTPLSFLNNPLLCGTIPGIPACSGKRNRFQSPVFLTIFILIICISSFVSTICCGIGCQRLKAIVSARNSASSRRSKMPDFVHNFPRITSRQLSEATGGFDERRLIGSGSYGQVYKGVLPDGTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYQRSPTSSASGSSDLNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSATVENMGKSTANMLTGSIGYIAP | 1595 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 25464009 | 25479905 | + | CcPI632755_10g012710.1 | Cco10g1271 | 190229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1271 | 1595 | Pfam | Leucine Rich Repeat | 869 | 891 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | Pfam | Leucine Rich Repeat | 1216 | 1238 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | Pfam | Leucine Rich Repeat | 1168 | 1188 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | Pfam | Leucine Rich Repeat | 1122 | 1141 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1537 | 1549 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1271 | 1595 | MobiDBLite | consensus disorder prediction | 445 | 474 | - | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 1093 | 1116 | IPR003591 | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 1214 | 1238 | IPR003591 | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 1262 | 1285 | IPR003591 | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 1165 | 1189 | IPR003591 | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 1286 | 1310 | IPR003591 | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 891 | 915 | IPR003591 | - | |
Cco10g1271 | 1595 | SMART | LRR_typ_2 | 1117 | 1141 | IPR003591 | - | |
Cco10g1271 | 1595 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 815 | 1009 | - | - | |
Cco10g1271 | 1595 | Gene3D | Ribonuclease Inhibitor | 966 | 1341 | IPR032675 | - | |
Cco10g1271 | 1595 | FunFam | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase | 1391 | 1485 | - | - | |
Cco10g1271 | 1595 | Gene3D | Phosphorylase Kinase; domain 1 | 1371 | 1485 | - | - | |
Cco10g1271 | 1595 | SUPERFAMILY | L domain-like | 778 | 1002 | - | - | |
Cco10g1271 | 1595 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 89 | - | - | |
Cco10g1271 | 1595 | SUPERFAMILY | Protein kinase-like (PK-like) | 11 | 275 | IPR011009 | - | |
Cco10g1271 | 1595 | Gene3D | Ribonuclease Inhibitor | 778 | 890 | IPR032675 | - | |
Cco10g1271 | 1595 | Gene3D | Ribonuclease Inhibitor | 891 | 965 | IPR032675 | - | |
Cco10g1271 | 1595 | MobiDBLite | consensus disorder prediction | 445 | 531 | - | - | |
Cco10g1271 | 1595 | Pfam | Leucine rich repeat | 1050 | 1105 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | Pfam | Leucine rich repeat | 893 | 953 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | Pfam | Leucine rich repeat | 1241 | 1299 | IPR001611 | GO:0005515(InterPro) | |
Cco10g1271 | 1595 | ProSitePatterns | Protein kinases ATP-binding region signature. | 19 | 42 | IPR017441 | GO:0005524(InterPro) | |
Cco10g1271 | 1595 | Coils | Coil | 656 | 697 | - | - | |
Cco10g1271 | 1595 | SUPERFAMILY | L domain-like | 1049 | 1325 | - | - | |
Cco10g1271 | 1595 | MobiDBLite | consensus disorder prediction | 404 | 433 | - | - | |
Cco10g1271 | 1595 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1416 | 1438 | IPR017441 | GO:0005524(InterPro) | |
Cco10g1271 | 1595 | ProSiteProfiles | Protein kinase domain profile. | 13 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1271 | 1595 | PANTHER | OS04G0122200 PROTEIN | 797 | 904 | IPR051809 | - | |
Cco10g1271 | 1595 | ProSiteProfiles | Protein kinase domain profile. | 1410 | 1595 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1271 | 1595 | FunFam | Serine/threonine-protein kinase BLUS1 | 2 | 90 | - | - | |
Cco10g1271 | 1595 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1486 | 1595 | - | - | |
Cco10g1271 | 1595 | FunFam | Leucine-rich repeat receptor-like protein kinase TDR | 1017 | 1335 | - | - | |
Cco10g1271 | 1595 | MobiDBLite | consensus disorder prediction | 380 | 433 | - | - | |
Cco10g1271 | 1595 | SMART | serkin_6 | 13 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1271 | 1595 | Pfam | Protein kinase domain | 15 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1271 | 1595 | Pfam | Protein kinase domain | 1412 | 1595 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1271 | 1595 | SUPERFAMILY | Protein kinase-like (PK-like) | 1386 | 1595 | IPR011009 | - | |
Cco10g1271 | 1595 | Gene3D | Transferase(Phosphotransferase) domain 1 | 94 | 326 | - | - | |
Cco10g1271 | 1595 | CDD | STKc_OSR1_SPAK | 11 | 274 | - | - | |
Cco10g1271 | 1595 | Pfam | Leucine rich repeat N-terminal domain | 778 | 816 | IPR013210 | - | |
Cco10g1271 | 1595 | MobiDBLite | consensus disorder prediction | 483 | 502 | - | - | |
Cco10g1271 | 1595 | FunFam | serine/threonine-protein kinase BLUS1 isoform X1 | 94 | 327 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1450 | Cco-Chr6:24965928 | Cco10g1271 | Cco-Chr10:25464009 | 2.00E-73 | dispersed | |
Cco09g2111 | Cco-Chr9:35503847 | Cco10g1271 | Cco-Chr10:25464009 | 7.10E-163 | dispersed | |
Cco10g0091 | Cco-Chr10:843819 | Cco10g1271 | Cco-Chr10:25464009 | 4.40E-142 | dispersed | |
Cco10g1271 | Cco-Chr10:25464009 | Cco11g1840 | Cco-Chr11:31059705 | 5.60E-49 | dispersed | |
Cco10g1271 | Cco-Chr10:25464009 | Cco05g0526 | Cco-Chr5:4222715 | 3.30E-86 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87156 | PF00069 | Pkinase | 1.80E-58 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1271 | - | - | - | 0.0 |