Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1271 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTATTATATTCTGTATGAGGAGGTCGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTCCTTAAATCACACTGCTCTTTTGTCAATGGCCATGATTTGTGGATCGTTATGCCCTACATGTCTGGAGGTTCGTGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTTGAGGAAGTGGTCATAGCAACAGTATTGCGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGCAGGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCGGCTTGTCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAACGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGACTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAAGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTTAGATAATGAAGAGAATGGCATGTTGCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAGAGGGTAAAAAATCTATCAATGAATCAACAATTATTGGTTCTTCCTCTCAACATTATTCTTCACCCATTGAGAATGGCTCCAATGAGGAGTTTCATTTGGAGAGCAGCAAAAGAATTTTGGGGAATACTCCTAATTCTAGCCAACATAAAAGAAGTATTTCTTCTAATACCGCTATTCAACAAGAAATCAGTTCACCACTGAACAGAAGAGAGAGTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTCTTGCAATTGGAATGACTTCTCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGATGTAGAAAAGGCAGCTGCATCCCCTATTTTGCAAAAAAGTCACAGTATGCAGGTTGGTAATTCTGAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCGCAATCGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCAGCGGCCCATATAACAGCAACGGAAAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGATATTACGAGCGAGAGATGAAATCCAAAGATTAAAATTAAACAATGCAGAGTTGAATTATGAAGTAGTGCCATTAGCGGAGAAAAAGCTTCCTCTCGTCTCGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGAGAGAAGAAGGTAACCTTACAGGTCATTTCCACTGTAGTATTGTTCTTCCGCTTGATATGGTTTTCTTCAAAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACGCGACCCCACTTCCACTCTAGCTAACTGGATTGAGGCTATTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCAAAGCTCAGCTTGATTGATGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGATATTGTTAACAGTTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTAGAAATCTTCACCGCCTTCGCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCCAGGCTTACTGTAATAAGTCTTAGGGAGAACAGGCTAAATGGCACAGTTCCACCTTCTCTTTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCTTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAATCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCTGGCGAACTGCCTGCACTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTGGCTGGCATGGGGCTTGGAGGGAGGCTGCCCAGTTCTATTGGTCATCTGGGTGTCAATTTTTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAGTTTAGCCAAGCTTTCCAAACTTGCAGGACTGAATTTGACATCAAATCTACTAAACGGAACAATTCCCGCAGACATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAAACATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATTTAACTCAGATGATTTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTTAGCGTTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCTGGAAATATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAACAATTTTCAAGGAAACTTGCCCATTGAGCTTAGCAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTACTAAATTTTTCAAATAATTCCCTCCAAGGTCATCTTCCAGATTCCCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAGCCAGTCTAGGTAAGCTCCAATCTCTCACTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACACCTCTGTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATTCCAGCCTGTTCTGGCAAGAGAAATCGGTTTCAATCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCGTATCAACAATATGCTGTGGGATTGGTTGTCAACGTCTAAAAGCAATTGTTTCAGCACGAAATAGTGCGTCATCAAGGAGATCAAAGATGCCAGATTTTGTGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAGGCCACTGGAGGTTTTGATGAACGGAGACTAATTGGTTCAGGCAGCTATGGACAAGTCTATAAAGGCGTTCTTCCAGATGGAACAACTGTAGCTGTTAAGGTTTTGCATACACAATCTGGAAACTCCACAAAGAGTTTTAACAGAGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCAACGTTCACCTACCAGCTCGGCTTCGGGTTCTTCAGATTTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGTAATGTACTTCTAAAGGATGACATGACAGCCCTTGTTTCTGACTTCGGGATCTCAAGGCTAATGACCCCTGGAATTGGAAGCGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAG 4786 40.7 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEILDNEENGMLRRQPSMKANDTVEGKKSINESTIIGSSSQHYSSPIENGSNEEFHLESSKRILGNTPNSSQHKRSISSNTAIQQEISSPLNRRESYETEKNGANGSLAIGMTSQAVDDVLSDSHSKDPKSSLSPATNDEEQDEKAKAPVIQQKGRFKVTSESVDVEKAAASPILQKSHSMQVGNSEVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQIAIGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLKLNNAELNYEVVPLAEKKLPLVSKKKCKAVKDDMMREEGNLTGHFHCSIVLPLDMVFFKAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIRDPTSTLANWIEAIDVCNFTGVACDRHRHRVSKLSLIDVGLVGKIPPFLSNLTGLRILDIVNSYLFGEIPSELFSLRNLHRLRLDSNSLEGPIPTSLASLSRLTVISLRENRLNGTVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPALLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPSSIGHLGVNFSVLSLQENQIFGSIPPSLAKLSKLAGLNLTSNLLNGTIPADISRLSKLEQLFLSHNLFTSNIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMIYLFLNHNLLSGTIPLALVKCTGLQKLDLSFNMLSGNIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLLNFSNNSLQGHLPDSLGELENLESFDISKNQLSGMIPASLGKLQSLTYLNLSFNNFQGMIPREGFFKSSTPLSFLNNPLLCGTIPGIPACSGKRNRFQSPVFLTIFILIICISSFVSTICCGIGCQRLKAIVSARNSASSRRSKMPDFVHNFPRITSRQLSEATGGFDERRLIGSGSYGQVYKGVLPDGTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYQRSPTSSASGSSDLNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSATVENMGKSTANMLTGSIGYIAP 1595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25464009 25479905 + CcPI632755_10g012710.1 Cco10g1271 190229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1271 1595 Pfam Leucine Rich Repeat 869 891 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine Rich Repeat 1216 1238 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine Rich Repeat 1168 1188 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine Rich Repeat 1122 1141 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1537 1549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 MobiDBLite consensus disorder prediction 445 474 - -
Cco10g1271 1595 SMART LRR_typ_2 1093 1116 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1214 1238 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1262 1285 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1165 1189 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1286 1310 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 891 915 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1117 1141 IPR003591 -
Cco10g1271 1595 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 815 1009 - -
Cco10g1271 1595 Gene3D Ribonuclease Inhibitor 966 1341 IPR032675 -
Cco10g1271 1595 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1391 1485 - -
Cco10g1271 1595 Gene3D Phosphorylase Kinase; domain 1 1371 1485 - -
Cco10g1271 1595 SUPERFAMILY L domain-like 778 1002 - -
Cco10g1271 1595 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cco10g1271 1595 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cco10g1271 1595 Gene3D Ribonuclease Inhibitor 778 890 IPR032675 -
Cco10g1271 1595 Gene3D Ribonuclease Inhibitor 891 965 IPR032675 -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 445 531 - -
Cco10g1271 1595 Pfam Leucine rich repeat 1050 1105 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine rich repeat 893 953 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine rich repeat 1241 1299 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cco10g1271 1595 Coils Coil 656 697 - -
Cco10g1271 1595 SUPERFAMILY L domain-like 1049 1325 - -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 404 433 - -
Cco10g1271 1595 ProSitePatterns Protein kinases ATP-binding region signature. 1416 1438 IPR017441 GO:0005524(InterPro)
Cco10g1271 1595 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 PANTHER OS04G0122200 PROTEIN 797 904 IPR051809 -
Cco10g1271 1595 ProSiteProfiles Protein kinase domain profile. 1410 1595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cco10g1271 1595 Gene3D Transferase(Phosphotransferase) domain 1 1486 1595 - -
Cco10g1271 1595 FunFam Leucine-rich repeat receptor-like protein kinase TDR 1017 1335 - -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 380 433 - -
Cco10g1271 1595 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 Pfam Protein kinase domain 1412 1595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 SUPERFAMILY Protein kinase-like (PK-like) 1386 1595 IPR011009 -
Cco10g1271 1595 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Cco10g1271 1595 CDD STKc_OSR1_SPAK 11 274 - -
Cco10g1271 1595 Pfam Leucine rich repeat N-terminal domain 778 816 IPR013210 -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 483 502 - -
Cco10g1271 1595 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1450 Cco-Chr6:24965928 Cco10g1271 Cco-Chr10:25464009 2.00E-73 dispersed
Cco09g2111 Cco-Chr9:35503847 Cco10g1271 Cco-Chr10:25464009 7.10E-163 dispersed
Cco10g0091 Cco-Chr10:843819 Cco10g1271 Cco-Chr10:25464009 4.40E-142 dispersed
Cco10g1271 Cco-Chr10:25464009 Cco11g1840 Cco-Chr11:31059705 5.60E-49 dispersed
Cco10g1271 Cco-Chr10:25464009 Cco05g0526 Cco-Chr5:4222715 3.30E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87156 PF00069 Pkinase 1.80E-58 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1271 - - - 0.0