Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1271 ATGGAGAAGAAGACTTATCCGATTGGTGAAGATTATTATATTCTGTATGAGGAGGTCGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAACGAGATCGTCGCCATTAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTCCTTAAATCACACTGCTCTTTTGTCAATGGCCATGATTTGTGGATCGTTATGCCCTACATGTCTGGAGGTTCGTGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTTGAGGAAGTGGTCATAGCAACAGTATTGCGAGAAGTATTGAAGGGGGTTGAATATCTTCATAATCATGGACATATACATCGGGATATCAAAGCAGGGAATATTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCGGCTTGTCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAACGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCAAAACGGCCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAATGATTACATTGCACGCACCCTTTTGGAAGGACTACCTGTTCTTGGTGATCGTATAAAGGCACTCAAGAGAAAAGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAGTCAATAAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCCTTATGTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTTAGATAATGAAGAGAATGGCATGTTGCGGAGACAACCCTCCATGAAAGCAAATGACACAGTAGAGGGTAAAAAATCTATCAATGAATCAACAATTATTGGTTCTTCCTCTCAACATTATTCTTCACCCATTGAGAATGGCTCCAATGAGGAGTTTCATTTGGAGAGCAGCAAAAGAATTTTGGGGAATACTCCTAATTCTAGCCAACATAAAAGAAGTATTTCTTCTAATACCGCTATTCAACAAGAAATCAGTTCACCACTGAACAGAAGAGAGAGTTATGAGACAGAAAAGAATGGTGCAAATGGCAGTCTTGCAATTGGAATGACTTCTCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAGTGTTGATGTAGAAAAGGCAGCTGCATCCCCTATTTTGCAAAAAAGTCACAGTATGCAGGTTGGTAATTCTGAGGTGATTACCTCAAATTCTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCGCAATCGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCAGCGGCCCATATAACAGCAACGGAAAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGATATTACGAGCGAGAGATGAAATCCAAAGATTAAAATTAAACAATGCAGAGTTGAATTATGAAGTAGTGCCATTAGCGGAGAAAAAGCTTCCTCTCGTCTCGAAGAAGAAATGTAAGGCAGTAAAGGATGATATGATGAGAGAAGAAGGTAACCTTACAGGTCATTTCCACTGTAGTATTGTTCTTCCGCTTGATATGGTTTTCTTCAAAGCTGTGTTCCTTCTCCTGTTTCAGTATCTGGTTTTGAATTCTGGGACTCCAGTTATTATAGGTCACCACTACCCTCCTCATAAGTCCTTGCTCACTGATAAAGCAGCCCTCCTTGCCTTCAGGAAGTGCATCATACGCGACCCCACTTCCACTCTAGCTAACTGGATTGAGGCTATTGATGTATGCAACTTCACTGGTGTTGCTTGTGACCGACACCGTCATCGGGTATCAAAGCTCAGCTTGATTGATGTTGGACTTGTGGGAAAGATTCCACCCTTCCTCTCCAATCTCACGGGTCTTCGAATTCTGGATATTGTTAACAGTTATCTTTTTGGGGAAATTCCTTCTGAACTTTTTTCTCTTAGAAATCTTCACCGCCTTCGCCTCGACAGCAACAGTTTGGAAGGTCCCATACCAACTTCCCTTGCTAGTTTGTCCAGGCTTACTGTAATAAGTCTTAGGGAGAACAGGCTAAATGGCACAGTTCCACCTTCTCTTTTTTCTAATTGCACGTCGTTGCTTAATGTAGACCTTTCCAACAACTTCTTAACAGGAAGAATTCCAGAAGAAATTGGAAATTGTCCAAAGCTGTGGAATCTCAATCTGTACAACAATCAGTTCAGTGGAGATCTTCCTCTTTCTTTAAGAAACACTTCGCTCTATAACTTGGATGTCGAATATAATCATCTTTCTGGCGAACTGCCTGCACTGCTTGTAGAAAACCTGCCTTCACTTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCACGATGGAAATACCAATCTTGAACCGTTCATTACTTCTCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTGGCTGGCATGGGGCTTGGAGGGAGGCTGCCCAGTTCTATTGGTCATCTGGGTGTCAATTTTTCAGTTCTGTCTTTGCAGGAAAACCAGATATTTGGATCAATTCCTCCAAGTTTAGCCAAGCTTTCCAAACTTGCAGGACTGAATTTGACATCAAATCTACTAAACGGAACAATTCCCGCAGACATAAGCAGGTTGTCAAAATTGGAGCAGCTTTTCTTATCACACAACCTCTTCACTTCAAACATTCCAGAAGCATTAGGCGAGTTGCCACATCTTGGATTGTTGGATCTATCTCACAACCAACTTTCAGGAGAAATCCCAGAAAGTATTGGAAATTTAACTCAGATGATTTATTTGTTTCTCAACCACAACCTCTTGTCTGGAACAATACCTTTAGCGTTGGTAAAGTGCACAGGTCTACAAAAGCTGGACTTATCTTTCAACATGTTATCTGGAAATATTCCTCGAGAGATCTTAGGCTTGCAAGAGATAAGAATTTTTATCAACCTTTCTCATAACAATTTTCAAGGAAACTTGCCCATTGAGCTTAGCAAGCTGAAAAATGTTCAAGAGATGGACCTTTCATCCAATAACCTCACTGGAAGCATCTTCCCTCAGATATCAAGTTGCATTGCACTGAGGTTACTAAATTTTTCAAATAATTCCCTCCAAGGTCATCTTCCAGATTCCCTAGGTGAACTCGAGAACCTTGAATCATTTGACATTTCAAAAAACCAATTGTCAGGCATGATTCCAGCCAGTCTAGGTAAGCTCCAATCTCTCACTTACCTGAATCTTTCATTCAATAACTTCCAAGGAATGATTCCAAGAGAGGGATTTTTCAAATCATCCACACCTCTGTCATTTTTGAACAATCCACTCCTTTGTGGGACAATTCCTGGAATTCCAGCCTGTTCTGGCAAGAGAAATCGGTTTCAATCACCTGTATTCTTGACTATATTCATTTTAATCATATGCATATCATCTTTCGTATCAACAATATGCTGTGGGATTGGTTGTCAACGTCTAAAAGCAATTGTTTCAGCACGAAATAGTGCGTCATCAAGGAGATCAAAGATGCCAGATTTTGTGCACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAGGCCACTGGAGGTTTTGATGAACGGAGACTAATTGGTTCAGGCAGCTATGGACAAGTCTATAAAGGCGTTCTTCCAGATGGAACAACTGTAGCTGTTAAGGTTTTGCATACACAATCTGGAAACTCCACAAAGAGTTTTAACAGAGAATGCGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATTATAACAGCTTGTAGTCTTCCGGATTTTAAAGCTCTAGTTCTACCATATATGGCAAATGGAAGCTTGGATAACCATCTATATCAACGTTCACCTACCAGCTCGGCTTCGGGTTCTTCAGATTTAAACCTTATTGAGAGGGTGAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTGCATCATCATTCTCCAGTCAGAGTCATACACTGTGATTTAAAGCCAAGTAATGTACTTCTAAAGGATGACATGACAGCCCTTGTTTCTGACTTCGGGATCTCAAGGCTAATGACCCCTGGAATTGGAAGCGCAACTGTTGAAAACATGGGAAAGTCAACTGCAAACATGTTAACTGGATCAATTGGATATATTGCACCAG 4786 40.7 MEKKTYPIGEDYYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLREVLKGVEYLHNHGHIHRDIKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLCALDVQEKKLQGQNSSEILDNEENGMLRRQPSMKANDTVEGKKSINESTIIGSSSQHYSSPIENGSNEEFHLESSKRILGNTPNSSQHKRSISSNTAIQQEISSPLNRRESYETEKNGANGSLAIGMTSQAVDDVLSDSHSKDPKSSLSPATNDEEQDEKAKAPVIQQKGRFKVTSESVDVEKAAASPILQKSHSMQVGNSEVITSNSATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQIAIGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLKLNNAELNYEVVPLAEKKLPLVSKKKCKAVKDDMMREEGNLTGHFHCSIVLPLDMVFFKAVFLLLFQYLVLNSGTPVIIGHHYPPHKSLLTDKAALLAFRKCIIRDPTSTLANWIEAIDVCNFTGVACDRHRHRVSKLSLIDVGLVGKIPPFLSNLTGLRILDIVNSYLFGEIPSELFSLRNLHRLRLDSNSLEGPIPTSLASLSRLTVISLRENRLNGTVPPSLFSNCTSLLNVDLSNNFLTGRIPEEIGNCPKLWNLNLYNNQFSGDLPLSLRNTSLYNLDVEYNHLSGELPALLVENLPSLSFLHLSNNDMVSHDGNTNLEPFITSLRNCSSLEELELAGMGLGGRLPSSIGHLGVNFSVLSLQENQIFGSIPPSLAKLSKLAGLNLTSNLLNGTIPADISRLSKLEQLFLSHNLFTSNIPEALGELPHLGLLDLSHNQLSGEIPESIGNLTQMIYLFLNHNLLSGTIPLALVKCTGLQKLDLSFNMLSGNIPREILGLQEIRIFINLSHNNFQGNLPIELSKLKNVQEMDLSSNNLTGSIFPQISSCIALRLLNFSNNSLQGHLPDSLGELENLESFDISKNQLSGMIPASLGKLQSLTYLNLSFNNFQGMIPREGFFKSSTPLSFLNNPLLCGTIPGIPACSGKRNRFQSPVFLTIFILIICISSFVSTICCGIGCQRLKAIVSARNSASSRRSKMPDFVHNFPRITSRQLSEATGGFDERRLIGSGSYGQVYKGVLPDGTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDNHLYQRSPTSSASGSSDLNLIERVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSATVENMGKSTANMLTGSIGYIAP 1595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25464009 25479905 + CcPI632755_10g012710.1 Cco10g1271 190229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1271 1595 Pfam Leucine Rich Repeat 869 891 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine Rich Repeat 1216 1238 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine Rich Repeat 1168 1188 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine Rich Repeat 1122 1141 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1537 1549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 MobiDBLite consensus disorder prediction 445 474 - -
Cco10g1271 1595 SMART LRR_typ_2 1093 1116 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1214 1238 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1262 1285 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1165 1189 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1286 1310 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 891 915 IPR003591 -
Cco10g1271 1595 SMART LRR_typ_2 1117 1141 IPR003591 -
Cco10g1271 1595 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 815 1009 - -
Cco10g1271 1595 Gene3D Ribonuclease Inhibitor 966 1341 IPR032675 -
Cco10g1271 1595 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1391 1485 - -
Cco10g1271 1595 Gene3D Phosphorylase Kinase; domain 1 1371 1485 - -
Cco10g1271 1595 SUPERFAMILY L domain-like 778 1002 - -
Cco10g1271 1595 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cco10g1271 1595 SUPERFAMILY Protein kinase-like (PK-like) 11 275 IPR011009 -
Cco10g1271 1595 Gene3D Ribonuclease Inhibitor 778 890 IPR032675 -
Cco10g1271 1595 Gene3D Ribonuclease Inhibitor 891 965 IPR032675 -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 445 531 - -
Cco10g1271 1595 Pfam Leucine rich repeat 1050 1105 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine rich repeat 893 953 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 Pfam Leucine rich repeat 1241 1299 IPR001611 GO:0005515(InterPro)
Cco10g1271 1595 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Cco10g1271 1595 Coils Coil 656 697 - -
Cco10g1271 1595 SUPERFAMILY L domain-like 1049 1325 - -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 404 433 - -
Cco10g1271 1595 ProSitePatterns Protein kinases ATP-binding region signature. 1416 1438 IPR017441 GO:0005524(InterPro)
Cco10g1271 1595 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 PANTHER OS04G0122200 PROTEIN 797 904 IPR051809 -
Cco10g1271 1595 ProSiteProfiles Protein kinase domain profile. 1410 1595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cco10g1271 1595 Gene3D Transferase(Phosphotransferase) domain 1 1486 1595 - -
Cco10g1271 1595 FunFam Leucine-rich repeat receptor-like protein kinase TDR 1017 1335 - -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 380 433 - -
Cco10g1271 1595 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 Pfam Protein kinase domain 1412 1595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1271 1595 SUPERFAMILY Protein kinase-like (PK-like) 1386 1595 IPR011009 -
Cco10g1271 1595 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Cco10g1271 1595 CDD STKc_OSR1_SPAK 11 274 - -
Cco10g1271 1595 Pfam Leucine rich repeat N-terminal domain 778 816 IPR013210 -
Cco10g1271 1595 MobiDBLite consensus disorder prediction 483 502 - -
Cco10g1271 1595 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1271 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1450 Cco-Chr6:24965928 Cco10g1271 Cco-Chr10:25464009 2.00E-73 dispersed
Cco09g2111 Cco-Chr9:35503847 Cco10g1271 Cco-Chr10:25464009 7.10E-163 dispersed
Cco10g0091 Cco-Chr10:843819 Cco10g1271 Cco-Chr10:25464009 4.40E-142 dispersed
Cco10g1271 Cco-Chr10:25464009 Cco11g1840 Cco-Chr11:31059705 5.60E-49 dispersed
Cco10g1271 Cco-Chr10:25464009 Cco05g0526 Cco-Chr5:4222715 3.30E-86 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1840 . 85 756 MAP Kinase Kinase Kinase Kinase AT1G53165 61.1 6.9e-214 740.7
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cco11g1840 . 85 755 MAP Kinase Kinase Kinase Kinase AT3G15220 63.1 7.1e-219 757.3
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cco11g1192 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 5.4e-242 834.3
Cco07g0773 . 4 841 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 2.3e-240 828.9
Cco09g2111 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 7.4e-253 870.2
Cco05g0526 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.2e-96 351.3
Cco10g0091 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.0e-247 853.2
Cco10g0091 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.7 1.4e-246 849.4
Cco10g1271 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 52.1 1.2e-132 470.7
Cco10g0091 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Cco10g1271 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 5.4e-216 747.7
Cco09g2111 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.7e-103 372.9
Cco10g1271 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cco10g0091 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cco05g0526 . 32 488 MAP Kinase Kinase Kinase Kinase AT4G14480 59.4 7.7e-143 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87156 PF00069 Pkinase 1.80E-58 CL0016 Cco PK