Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1274 ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGTTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTACCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGCTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCTTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAATCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGCAAGTGGAATTGTCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGGCTGATGCCACTTTAA 1344 42.49 MADLKERLLPPKPASAVNLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGASGIVIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25569569 25572805 + CcPI632755_10g012740.1 Cco10g1274 190232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1274 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Cco10g1274 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Cco10g1274 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Cco10g1274 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Cco10g1274 447 Pfam Magnesium transporter MRS2-like 326 375 - -
Cco10g1274 447 Pfam Magnesium transporter MRS2-like 57 270 - -
Cco10g1274 447 Gene3D - 41 124 - -
Cco10g1274 447 Coils Coil 228 255 - -
Cco10g1274 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
Cco10g1274 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Cco10g1274 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1274 K16075 - - csv:101217419 823.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0767 Cco-Chr2:8113785 Cco10g1274 Cco-Chr10:25569569 7.70E-90 dispersed
Cco06g0676 Cco-Chr6:7546172 Cco10g1274 Cco-Chr10:25569569 4.40E-89 dispersed
Cco08g1198 Cco-Chr8:23709281 Cco10g1274 Cco-Chr10:25569569 5.50E-106 dispersed
Cco10g1274 Cco-Chr10:25569569 Cco07g0064 Cco-Chr7:611745 8.80E-85 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1274 . 1 447 MRS2 Gene Family AT1G16010 85.0 1.2e-206 716.1
Cco08g1198 . 88 462 MRS2 Gene Family AT1G16010 52.4 2.8e-107 386.0
Cco06g0676 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cco07g0064 . 796 1167 MRS2 Gene Family AT5G64560 68.4 9.0e-131 463.8
Cco02g0767 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cco05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.3 1.0e-141 500.4
Cco02g0023 . 59 442 MRS2 Gene Family AT3G58970 70.1 4.9e-141 498.0
Cco08g1198 . 88 462 MRS2 Gene Family AT2G03620 68.4 4.2e-137 485.0
Cco10g1274 . 13 447 MRS2 Gene Family AT2G03620 53.0 3.6e-112 402.1
Cco05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.7 8.0e-93 337.8
Cco06g0676 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cco07g0064 . 796 1129 MRS2 Gene Family AT5G09690 63.0 1.0e-106 383.6
Cco10g1274 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cco06g0676 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cco07g0064 . 831 1089 MRS2 Gene Family AT5G09720 60.5 2.7e-74 275.8
Cco10g1274 . 1 447 MRS2 Gene Family AT1G80900 83.0 2.1e-200 695.3
Cco08g1198 . 80 462 MRS2 Gene Family AT1G80900 53.9 4.0e-106 382.1
Cco01g1551 . 16 455 MRS2 Gene Family AT5G22830 68.6 1.5e-156 549.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42