Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco10g1274 | ATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGTTAATCTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGCAGGGTACCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGCTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCTTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAATCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGCAAGTGGAATTGTCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGGCTGATGCCACTTTAA | 1344 | 42.49 | MADLKERLLPPKPASAVNLREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGASGIVIFSAFVWFFRYKRLMPL | 447 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 25569569 | 25572805 | + | CcPI632755_10g012740.1 | Cco10g1274 | 190232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco10g1274 | 447 | FunFam | Magnesium transporter MRS2-1 | 385 | 445 | - | - | |
| Cco10g1274 | 447 | CDD | Mrs2_Mfm1p-like | 53 | 444 | IPR039204 | - | |
| Cco10g1274 | 447 | Gene3D | Magnesium transport protein CorA, transmembrane region | 385 | 445 | - | - | |
| Cco10g1274 | 447 | FunFam | Magnesium transporter MRS2-1 | 41 | 124 | - | - | |
| Cco10g1274 | 447 | Pfam | Magnesium transporter MRS2-like | 326 | 375 | - | - | |
| Cco10g1274 | 447 | Pfam | Magnesium transporter MRS2-like | 57 | 270 | - | - | |
| Cco10g1274 | 447 | Gene3D | - | 41 | 124 | - | - | |
| Cco10g1274 | 447 | Coils | Coil | 228 | 255 | - | - | |
| Cco10g1274 | 447 | Gene3D | Magnesium transport protein CorA, transmembrane region | 125 | 378 | - | - | |
| Cco10g1274 | 447 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 384 | 437 | IPR045863 | - | |
| Cco10g1274 | 447 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 35 | 444 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0767 | Cco-Chr2:8113785 | Cco10g1274 | Cco-Chr10:25569569 | 7.70E-90 | dispersed | |
| Cco06g0676 | Cco-Chr6:7546172 | Cco10g1274 | Cco-Chr10:25569569 | 4.40E-89 | dispersed | |
| Cco08g1198 | Cco-Chr8:23709281 | Cco10g1274 | Cco-Chr10:25569569 | 5.50E-106 | dispersed | |
| Cco10g1274 | Cco-Chr10:25569569 | Cco07g0064 | Cco-Chr7:611745 | 8.80E-85 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco10g1274 | K16075 | - | csv:101217419 | 823.542 |