Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco10g1280 ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCAGGAGAATGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAATTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACTCGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTCCATGGTTTTCTTCAGAAGCCAAGGAAATGGTATCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCTAGTTTCATTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCGCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAAGTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA 1308 46.25 MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTQENVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPQKRASMVQIMQSPWFQKGFTKLVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGESECL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25700627 25701934 + CcPI632755_10g012800.1 Cco10g1280 190238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco10g1280 435 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165(InterPro)
Cco10g1280 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco10g1280 435 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1280 435 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Cco10g1280 435 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Cco10g1280 435 CDD CIPK_C 308 422 - -
Cco10g1280 435 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco10g1280 435 CDD STKc_SnRK3 15 270 - -
Cco10g1280 435 Gene3D Transferase(Phosphotransferase) domain 1 7 305 - -
Cco10g1280 435 Pfam NAF domain 304 359 IPR004041 GO:0007165(InterPro)
Cco10g1280 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco10g1280 435 FunFam Non-specific serine/threonine protein kinase 302 426 - -
Cco10g1280 435 SUPERFAMILY Protein kinase-like (PK-like) 12 284 IPR011009 -
Cco10g1280 435 Gene3D Kinase associated domain 1, KA1 306 427 - -
Cco10g1280 435 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Cco10g1280 435 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1418 Cco-Chr6:24685348 Cco10g1280 Cco-Chr10:25700627 7.50E-134 dispersed
Cco06g1610 Cco-Chr6:26682146 Cco10g1280 Cco-Chr10:25700627 1.70E-23 dispersed
Cco08g1342 Cco-Chr8:25286084 Cco10g1280 Cco-Chr10:25700627 9.00E-98 dispersed
Cco10g0218 Cco-Chr10:2280847 Cco10g1280 Cco-Chr10:25700627 1.10E-50 dispersed
Cco10g1280 Cco-Chr10:25700627 Cco11g0072 Cco-Chr11:746081 2.80E-67 dispersed
Cco11g1840 Cco-Chr11:31059705 Cco10g1280 Cco-Chr10:25700627 1.60E-25 dispersed
Cco10g1280 Cco-Chr10:25700627 Cco05g1869 Cco-Chr5:27617417 2.30E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87157 PF00069 Pkinase 2.20E-77 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco10g1280 - - - 0.0