Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco10g1280 | ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCAGGAGAATGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAATTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACTCGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTCCATGGTTTTCTTCAGAAGCCAAGGAAATGGTATCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCTAGTTTCATTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCGCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAAGTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA | 1308 | 46.25 | MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTQENVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPQKRASMVQIMQSPWFQKGFTKLVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGESECL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 25700627 | 25701934 | + | CcPI632755_10g012800.1 | Cco10g1280 | 190238 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco10g1280 | 435 | ProSiteProfiles | NAF domain profile. | 302 | 327 | IPR018451 | GO:0007165(InterPro) | |
Cco10g1280 | 435 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 9 | 419 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco10g1280 | 435 | Pfam | Protein kinase domain | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1280 | 435 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 54 | IPR017441 | GO:0005524(InterPro) | |
Cco10g1280 | 435 | FunFam | Non-specific serine/threonine protein kinase | 9 | 299 | - | - | |
Cco10g1280 | 435 | CDD | CIPK_C | 308 | 422 | - | - | |
Cco10g1280 | 435 | SMART | serkin_6 | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco10g1280 | 435 | CDD | STKc_SnRK3 | 15 | 270 | - | - | |
Cco10g1280 | 435 | Gene3D | Transferase(Phosphotransferase) domain 1 | 7 | 305 | - | - | |
Cco10g1280 | 435 | Pfam | NAF domain | 304 | 359 | IPR004041 | GO:0007165(InterPro) | |
Cco10g1280 | 435 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco10g1280 | 435 | FunFam | Non-specific serine/threonine protein kinase | 302 | 426 | - | - | |
Cco10g1280 | 435 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 284 | IPR011009 | - | |
Cco10g1280 | 435 | Gene3D | Kinase associated domain 1, KA1 | 306 | 427 | - | - | |
Cco10g1280 | 435 | FunFam | Non-specific serine/threonine protein kinase | 7 | 95 | - | - | |
Cco10g1280 | 435 | ProSiteProfiles | Protein kinase domain profile. | 16 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1418 | Cco-Chr6:24685348 | Cco10g1280 | Cco-Chr10:25700627 | 7.50E-134 | dispersed | |
Cco06g1610 | Cco-Chr6:26682146 | Cco10g1280 | Cco-Chr10:25700627 | 1.70E-23 | dispersed | |
Cco08g1342 | Cco-Chr8:25286084 | Cco10g1280 | Cco-Chr10:25700627 | 9.00E-98 | dispersed | |
Cco10g0218 | Cco-Chr10:2280847 | Cco10g1280 | Cco-Chr10:25700627 | 1.10E-50 | dispersed | |
Cco10g1280 | Cco-Chr10:25700627 | Cco11g0072 | Cco-Chr11:746081 | 2.80E-67 | dispersed | |
Cco11g1840 | Cco-Chr11:31059705 | Cco10g1280 | Cco-Chr10:25700627 | 1.60E-25 | dispersed | |
Cco10g1280 | Cco-Chr10:25700627 | Cco05g1869 | Cco-Chr5:27617417 | 2.30E-175 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87157 | PF00069 | Pkinase | 2.20E-77 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco10g1280 | - | - | - | 0.0 |